Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037529 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 5.8e-52 207.6 131 100.0
CSS0035071 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.5e-39 165.6 146 63.7
CSS0047509 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.5e-39 165.6 146 63.7
CSS0029028 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 7.3e-39 164.1 146 72.6
CSS0036493 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.4e-37 159.1 135 77.8
CSS0015116 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 9.0e-37 157.1 146 69.9
CSS0050269 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 6.4e-35 151.0 146 62.3
CSS0010138 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 9.0e-29 130.6 135 60.0
CSS0005489 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 4.3e-23 111.7 120 50.8
DCAR_024985 Daucus carota HOM05D000570 ORTHO05D001174 1.6e-17 93.2 94 73.4
Oeu013830.1 Olea europaea HOM05D000570 ORTHO05D001174 3.5e-17 92.0 94 51.1
Hma1.2p1_0298F.1_g117490 Hydrangea macrophylla HOM05D000570 ORTHO05D001174 6.0e-17 91.3 117 59.0
GSVIVG01004806001 Vitis vinifera HOM05D000570 ORTHO05D001174 5.1e-16 88.2 94 59.6
Actinidia39260 Actinidia chinensis HOM05D000570 ORTHO05D001174 9.6e-15 84.0 119 63.0
PGSC0003DMG400016709 Solanum tuberosum HOM05D000570 ORTHO05D001174 9.6e-15 84.0 94 55.3
TAR626G0159 Trochodendron aralioides HOM05D000570 ORTHO05D001174 1.3e-14 83.6 95 53.7
Duzib235G1179 Durio zibethinus HOM05D000570 ORTHO05D001174 2.1e-14 82.8 94 50.0
Atru.chr10.2275 Acer truncatum HOM05D000570 ORTHO05D001174 2.8e-14 82.4 94 47.9
QL02p081725 Quercus lobata HOM05D017261 ORTHO05D015793 3.7e-14 82.0 75 54.7
CAN.G1014.44 Capsicum annuum HOM05D000570 ORTHO05D001174 6.3e-14 81.3 95 53.7
Solyc02g081070.4 Solanum lycopersicum HOM05D000570 ORTHO05D001174 6.3e-14 81.3 94 52.1
Sopen02g025740 Solanum pennellii HOM05D000570 ORTHO05D001174 6.3e-14 81.3 94 53.2
Ciclev10014418m.g Citrus clementina HOM05D000570 ORTHO05D001174 1.8e-13 79.7 40 87.5
Lj1A1235G87 Lonicera japonica HOM05D000570 ORTHO05D001174 1.8e-13 79.7 95 53.7
Lsat_1_v5_gn_7_15161 Lactuca sativa HOM05D000570 ORTHO05D001174 2.4e-13 79.3 94 50.0
Cpa.g.sc152.51 Carica papaya HOM05D000570 ORTHO05D001174 3.1e-13 79.0 90 52.2
ECA236G0302 Erigeron canadensis HOM05D000570 ORTHO05D001174 3.1e-13 79.0 92 52.2
MSTRG.14627 Avicennia marina HOM05D000570 ORTHO05D001174 4.1e-13 78.6 91 50.5
Ah.09g234550 Amaranthus hybridus HOM05D000570 ORTHO05D001174 5.3e-13 78.2 40 80.0
vmacro15803 Vaccinium macrocarpon HOM05D000570 ORTHO05D001174 6.9e-13 77.8 129 51.9
Lalb_Chr15g0087741 Lupinus albus HOM05D000570 ORTHO05D001174 1.5e-12 76.6 38 86.8
Sc05g0009430 Simmondsia chinensis HOM05D000570 ORTHO05D001174 1.5e-12 76.6 122 41.8
TPR.G12988 Trifolium pratense HOM05D000570 ORTHO05D001174 1.5e-12 76.6 95 47.4
QL05p072009 Quercus lobata HOM05D000570 ORTHO05D001174 2.6e-12 75.9 74 50.0
Rhsim02G0105000 Rhododendron simsii HOM05D000570 ORTHO05D001174 2.6e-12 75.9 120 61.7
COL.COLO4_31827 Corchorus olitorius HOM05D000570 ORTHO05D001174 5.9e-12 74.7 94 48.9
Gohir.A06G150700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 7.6e-12 74.3 94 45.7
Nitab4.5_0012576g0010 Nicotiana tabacum HOM05D000570 ORTHO05D001174 7.6e-12 74.3 94 55.3
Sabra11G0008000 Salix brachista HOM05D000570 ORTHO05D001174 1.0e-11 73.9 82 48.8
SGA_v2.0_scaffold89G27483 Striga asiatica HOM05D000570 ORTHO05D001174 1.0e-11 73.9 90 53.3
Thecc.06G227500 Theobroma cacao HOM05D000570 ORTHO05D001174 1.0e-11 73.9 94 54.3
Gohir.D06G156900 Gossypium hirsutum HOM05D000570 ORTHO05D001174 1.3e-11 73.6 94 45.7
Gorai.010G183400 Gossypium raimondii HOM05D000570 ORTHO05D001174 1.3e-11 73.6 94 45.7
HanXRQChr05g0129311 Helianthus annuus HOM05D000570 ORTHO05D001174 1.3e-11 73.6 94 48.9
Lalb_Chr20g0118921 Lupinus albus HOM05D000570 ORTHO05D001174 1.3e-11 73.6 94 43.6
Hund21434 Selenicereus undatus HOM05D000570 ORTHO05D001174 5.0e-11 71.6 40 72.5
MD10G1326000 Malus domestica HOM05D000570 ORTHO05D001174 6.5e-11 71.2 94 51.1
PGR004G0535 Punica granatum HOM05D000570 ORTHO05D001174 6.5e-11 71.2 94 50.0
Cc09_g01270 Coffea canephora HOM05D000570 ORTHO05D001174 1.4e-10 70.1 95 47.4
MD05G1351900 Malus domestica HOM05D000570 ORTHO05D001174 1.4e-10 70.1 34 88.2
HanXRQChr15g0470551 Helianthus annuus HOM05D000570 ORTHO05D001174 1.9e-10 69.7 94 54.3
MBI19_g45795_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D001174 1.9e-10 69.7 94 43.6
Phvul.006G146100 Phaseolus vulgaris HOM05D000570 ORTHO05D001174 2.5e-10 69.3 94 50.0
CDE04G0812 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 7.2e-10 67.8 92 41.3
Glyma.15G111600 Glycine max HOM05D000570 ORTHO05D001174 1.6e-09 66.6 40 72.5
CANSAT56G2530 Cannabis sativa HOM05D000570 ORTHO05D001174 2.1e-09 66.2 92 46.7
Migut.H01588 Erythranthe guttata HOM05D000570 ORTHO05D001174 3.5e-09 65.5 94 43.6
CsaV3_1G046110 Cucumis sativus L. HOM05D000570 ORTHO05D001174 6.1e-09 64.7 34 79.4
PSO210G6440 Papaver somniferum HOM05D000570 ORTHO05D001174 6.1e-09 64.7 94 50.0
Gohir.A10G011100 Gossypium hirsutum HOM05D000570 ORTHO05D001174 7.9e-09 64.3 94 56.4
Manes.16G003200 Manihot esculenta HOM05D000570 ORTHO05D001174 1.0e-08 63.9 86 47.7
Potri.004G005301 Populus trichocarpa HOM05D000570 ORTHO05D001174 1.0e-08 63.9 84 46.4
Hund23438 Selenicereus undatus HOM05D000570 ORTHO05D001174 2.3e-08 62.8 34 70.6
PSO832G2605 Papaver somniferum HOM05D000570 ORTHO05D001174 3.9e-08 62.0 94 47.9
Zm00001eb234920 Zea mays HOM05D000570 ORTHO05D001174 5.1e-08 61.6 91 40.7
Potri.011G010500 Populus trichocarpa HOM05D000570 ORTHO05D001174 6.7e-08 61.2 75 44.0
THA.LOC104813393 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 6.7e-08 61.2 94 40.4
Gorai.011G011800 Gossypium raimondii HOM05D000570 ORTHO05D001174 8.7e-08 60.8 94 57.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 8.7e-08 60.8 95 48.4
CDE06G2079 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.5e-07 59.3 99 38.4
Lj6g0005851 Lotus japonicus HOM05D000570 ORTHO05D001174 4.3e-07 58.5 37 75.7
CDE06G1424 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 7.4e-07 57.8 40 60.0
Hund05695 Selenicereus undatus HOM05D000570 ORTHO05D001174 7.4e-07 57.8 95 34.7
CARHR044040 Cardamine hirsuta HOM05D000570 ORTHO05D001174 9.7e-07 57.4 96 39.6
Gohir.D10G010700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 1.3e-06 57.0 94 54.3
Manes.17G027800 Manihot esculenta HOM05D000570 ORTHO05D001174 1.3e-06 57.0 28 82.1
THA.LOC104812980 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 2.2e-06 56.2 90 40.0
Nitab4.5_0001409g0210 Nicotiana tabacum HOM05D000570 ORTHO05D001174 2.8e-06 55.8 81 54.3
BcaB07g33305 Brassica carinata HOM05D000570 ORTHO05D001174 3.7e-06 55.5 96 60.4
CDE07G0083 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 3.7e-06 55.5 99 35.4
Os07g0618400 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 3.7e-06 55.5 39 59.0
Sabra04G0002700 Salix brachista HOM05D000570 ORTHO05D001174 3.7e-06 55.5 82 41.5
SGA_v2.0_scaffold49G18250 Striga asiatica HOM05D000570 ORTHO05D001174 3.7e-06 55.5 83 38.6
Manes.11G011300 Manihot esculenta HOM05D000570 ORTHO05D001174 6.3e-06 54.7 40 57.5
Peaxi162Scf00178g00216 Petunia axillaris HOM05D000570 ORTHO05D001174 6.3e-06 54.7 80 50.0
HPP92_010491 Vanilla planifolia HOM05D000570 ORTHO05D001174 6.3e-06 54.7 83 49.4
Os02g0190500 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 8.2e-06 54.3 93 38.7
Sp1g40260 Schrenkiella parvula HOM05D000570 ORTHO05D001174 8.2e-06 54.3 40 60.0


User provided reference genes

Program Settings