Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037508 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 3.8e-34 147.5 70 100.0
CSS0043694 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 1.1e-28 129.4 65 92.3
CSS0039859 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.6e-27 124.8 67 89.6
CSS0048282 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 6.5e-26 120.2 68 83.8
CSS0010985 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 4.8e-21 104.0 55 89.1
CSS0016703 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 8.2e-21 103.2 54 90.7
vmacro20980 Vaccinium macrocarpon HOM05D003518 ORTHO05D005164 9.1e-20 99.8 64 65.6
Dinv43741 Davidia involucrata HOM05D003518 ORTHO05D005164 1.1e-17 92.8 60 71.7
Dinv32408 Davidia involucrata HOM05D003518 ORTHO05D005164 1.9e-17 92.0 66 65.2
Rhsim07G0023000 Rhododendron simsii HOM05D003518 ORTHO05D005164 1.9e-17 92.0 61 63.9
Actinidia33452 Actinidia chinensis HOM05D003518 ORTHO05D005164 4.2e-17 90.9 63 65.1
Rhsim01G0160000 Rhododendron simsii HOM05D003518 ORTHO05D005164 2.1e-16 88.6 60 61.7
Potri.002G151800 Populus trichocarpa HOM05D003518 ORTHO05D005164 8.0e-16 86.7 60 63.3
Hma1.2p1_0132F.1_g060640 Hydrangea macrophylla HOM05D003518 ORTHO05D005164 1.8e-15 85.5 61 67.2
Duzib133G1143 Durio zibethinus HOM05D003518 ORTHO05D005164 6.7e-15 83.6 66 51.5
Atru.chr5.372 Acer truncatum HOM05D003518 ORTHO05D005164 8.8e-15 83.2 64 57.8
Cc02_g37010 Coffea canephora HOM05D003518 ORTHO05D005164 3.3e-14 81.3 61 57.4
FAN03G3110 Fragaria x ananassa HOM05D003518 ORTHO05D005164 3.3e-14 81.3 62 58.1
Prupe.2G151300 Prunus persica HOM05D003518 ORTHO05D005164 3.3e-14 81.3 61 55.7
RcHm_v2.0_Chr1g0351731 Rosa chinensis HOM05D003518 ORTHO05D005164 4.4e-14 80.9 60 61.7
Sabra02G0120000 Salix brachista HOM05D003518 ORTHO05D005164 5.7e-14 80.5 59 59.3
TWI59G1247 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 5.7e-14 80.5 66 53.0
FvH4_7g12710 Fragaria vesca HOM05D003518 ORTHO05D005164 7.4e-14 80.1 60 60.0
FAN01G1761 Fragaria x ananassa HOM05D003518 ORTHO05D005164 7.4e-14 80.1 60 60.0
FAN06G1131 Fragaria x ananassa HOM05D003518 ORTHO05D005164 7.4e-14 80.1 60 60.0
FAN06G5121 Fragaria x ananassa HOM05D003518 ORTHO05D005164 7.4e-14 80.1 60 60.0
MD02G1197300 Malus domestica HOM05D003518 ORTHO05D005164 9.7e-14 79.7 61 54.1
GSVIVG01027580001 Vitis vinifera HOM05D003518 ORTHO05D005164 9.7e-14 79.7 58 58.6
CANSAT56G2265 Cannabis sativa HOM05D003518 ORTHO05D005164 1.3e-13 79.3 61 52.5
Manes.01G263400 Manihot esculenta HOM05D003518 ORTHO05D005164 1.3e-13 79.3 59 57.6
PGR042G3961 Punica granatum HOM05D003518 ORTHO05D005164 1.3e-13 79.3 67 52.2
Gohir.A12G102800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.7e-13 79.0 60 53.3
FAN10G3707 Fragaria x ananassa HOM05D003518 ORTHO05D005164 2.8e-13 78.2 60 58.3
Potri.014G074300 Populus trichocarpa HOM05D003518 ORTHO05D005164 3.7e-13 77.8 60 55.0
FAN10G3827 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.8e-13 77.4 60 58.3
Gorai.008G115300 Gossypium raimondii HOM05D003518 ORTHO05D005164 4.8e-13 77.4 60 53.3
CiPaw.01G258000 Carya illinoinensis HOM05D003518 ORTHO05D005164 6.3e-13 77.0 62 51.6
Lsat_1_v5_gn_7_6740 Lactuca sativa HOM05D003518 ORTHO05D005164 6.3e-13 77.0 63 57.1
Oeu058604.1 Olea europaea HOM05D003518 ORTHO05D005164 6.3e-13 77.0 59 55.9
Lalb_Chr04g0256591 Lupinus albus HOM05D003518 ORTHO05D005164 1.1e-12 76.3 56 60.7
TWI14G0835 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 1.4e-12 75.9 66 51.5
Ciclev10019439m.g Citrus clementina HOM05D003518 ORTHO05D005164 1.8e-12 75.5 61 50.8
Sabra14G0053000 Salix brachista HOM05D003518 ORTHO05D005164 1.8e-12 75.5 57 57.9
Lalb_Chr17g0340051 Lupinus albus HOM05D003518 ORTHO05D005164 2.4e-12 75.1 59 57.6
SGA_v2.0_scaffold153G37052 Striga asiatica HOM05D003518 ORTHO05D005164 5.3e-12 73.9 60 51.7
Medtr8g033180 Medicago truncatula HOM05D003518 ORTHO05D005164 7.0e-12 73.6 63 52.4
Ah.05g175810 Amaranthus hybridus HOM05D003518 ORTHO05D005164 9.1e-12 73.2 56 51.8
Duzib138G0903 Durio zibethinus HOM05D003518 ORTHO05D005164 9.1e-12 73.2 60 50.0
MD07G1123700 Malus domestica HOM05D003518 ORTHO05D005164 9.1e-12 73.2 61 49.2
DCAR_015924 Daucus carota HOM05D003518 ORTHO05D005164 1.2e-11 72.8 61 55.7
ECA236G3950 Erigeron canadensis HOM05D003518 ORTHO05D005164 1.2e-11 72.8 61 54.1
Eucgr.E01329 Eucalyptus grandis HOM05D003518 ORTHO05D005164 2.0e-11 72.0 58 55.2
Manes.05G041800 Manihot esculenta HOM05D003518 ORTHO05D005164 2.0e-11 72.0 58 51.7
PSO782G5439 Papaver somniferum HOM05D003518 ORTHO05D005164 2.6e-11 71.6 53 58.5
Haze_16711 Corylus avellana HOM05D003518 ORTHO05D005164 3.5e-11 71.2 66 47.0
SalBow7G3081 Salvia bowleyana HOM05D003518 ORTHO05D005164 3.5e-11 71.2 59 50.8
Glyma.07G080800 Glycine max HOM05D003518 ORTHO05D005164 4.5e-11 70.9 63 50.8
Aqoxy7G00493 Aquilegia oxysepala HOM05D003518 ORTHO05D005164 5.9e-11 70.5 66 47.0
DCAR_006891 Daucus carota HOM05D003518 ORTHO05D005164 5.9e-11 70.5 61 54.1
HanXRQChr04g0122151 Helianthus annuus HOM05D003518 ORTHO05D005164 5.9e-11 70.5 63 50.8
PSO478G4904 Papaver somniferum HOM05D003518 ORTHO05D005164 5.9e-11 70.5 53 58.5
Sc23g0003400 Simmondsia chinensis HOM05D003518 ORTHO05D005164 5.9e-11 70.5 54 55.6
THA.LOC104802006 Tarenaya hassleriana HOM05D003518 ORTHO05D005164 5.9e-11 70.5 61 47.5
CAN.G170.67 Capsicum annuum HOM05D003518 ORTHO05D005164 7.7e-11 70.1 59 52.5
HanXRQChr06g0169291 Helianthus annuus HOM05D003518 ORTHO05D005164 7.7e-11 70.1 63 50.8
Lj3g0010840 Lotus japonicus HOM05D003518 ORTHO05D005164 7.7e-11 70.1 59 47.5
CiPaw.02G164700 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.0e-10 69.7 59 49.2
AUR62033382 Chenopodium quinoa HOM05D003518 ORTHO05D005164 1.0e-10 69.7 56 51.8
Gohir.D11G088000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.0e-10 69.7 66 42.4
Gorai.007G093900 Gossypium raimondii HOM05D003518 ORTHO05D005164 1.0e-10 69.7 66 42.4
arahy.Tifrunner.gnm1.ann1.4HY23M Arachis hypogaea HOM05D003518 ORTHO05D005164 1.3e-10 69.3 58 51.7
EL10Ac1g00954 Beta vulgaris HOM05D003518 ORTHO05D005164 1.7e-10 68.9 56 51.8
QL08p051054 Quercus lobata HOM05D003518 ORTHO05D005164 1.7e-10 68.9 59 52.5
AUR62004275 Chenopodium quinoa HOM05D003518 ORTHO05D005164 2.2e-10 68.6 56 51.8
Ca_23782_v3 Cicer arietinum L. HOM05D003518 ORTHO05D005164 2.2e-10 68.6 63 47.6
MBI18_g40306_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D015542 2.2e-10 68.6 62 51.6
Oeu024431.2 Olea europaea HOM05D003518 ORTHO05D005164 2.2e-10 68.6 61 54.1
Sopen01g037730 Solanum pennellii HOM05D003518 ORTHO05D005164 2.2e-10 68.6 59 52.5
Nn1g01294 Nelumbo nucifera HOM05D003518 ORTHO05D005164 3.8e-10 67.8 58 53.4
ECA234G2542 Erigeron canadensis HOM05D003518 ORTHO05D005164 5.0e-10 67.4 61 54.1
MBI11_g05096_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D005164 5.0e-10 67.4 61 50.8
Solyc01g091950.4 Solanum lycopersicum HOM05D003518 ORTHO05D005164 5.0e-10 67.4 59 50.8
VMungo0331G0661 Vigna mungo HOM05D003518 ORTHO05D005164 5.0e-10 67.4 63 47.6
Sed0024132 Sechium edule HOM05D003518 ORTHO05D005164 6.5e-10 67.0 57 52.6
arahy.Tifrunner.gnm1.ann1.N1W82K Arachis hypogaea HOM05D003518 ORTHO05D005164 8.5e-10 66.6 58 50.0
Migut.B01669 Erythranthe guttata HOM05D003518 ORTHO05D005164 8.5e-10 66.6 58 43.1
A04p33950 Brassica napus HOM05D003518 ORTHO05D005164 1.1e-09 66.2 56 51.8
BraA04t18856Z Brassica rapa HOM05D003518 ORTHO05D005164 1.1e-09 66.2 56 51.8
Glyma.03G019200 Glycine max HOM05D003518 ORTHO05D005164 1.1e-09 66.2 63 47.6
A03p25290 Brassica napus HOM05D003518 ORTHO05D005164 1.5e-09 65.9 56 50.0
Nn6g34312 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.5e-09 65.9 61 49.2
Cpa.g.sc18.167 Carica papaya HOM05D003518 ORTHO05D005164 1.9e-09 65.5 59 44.1
BcaC01g05115 Brassica carinata HOM05D003518 ORTHO05D005164 3.2e-09 64.7 56 50.0
C03p30180 Brassica napus HOM05D003518 ORTHO05D005164 3.2e-09 64.7 56 50.0
HanXRQChr16g0523541 Helianthus annuus HOM05D003518 ORTHO05D005164 3.2e-09 64.7 62 46.8
Lsat_1_v5_gn_4_37220 Lactuca sativa HOM05D003518 ORTHO05D005164 4.2e-09 64.3 61 47.5
ClCG05G001980 Citrullus lanatus HOM05D003518 ORTHO05D005164 5.5e-09 63.9 57 52.6
MSTRG.20781 Avicennia marina HOM05D003518 ORTHO05D005164 7.2e-09 63.5 60 46.7
BraA03t11733Z Brassica rapa HOM05D003518 ORTHO05D005164 7.2e-09 63.5 56 48.2
arahy.Tifrunner.gnm1.ann1.I486B7 Arachis hypogaea HOM05D003518 ORTHO05D005164 9.4e-09 63.2 51 52.9
arahy.Tifrunner.gnm1.ann1.UCSC4W Arachis hypogaea HOM05D003518 ORTHO05D005164 9.4e-09 63.2 51 52.9
BcaB06g29432 Brassica carinata HOM05D003518 ORTHO05D005164 9.4e-09 63.2 56 50.0
BolC3t15366H Brassica oleracea HOM05D003518 ORTHO05D005164 9.4e-09 63.2 56 50.0
BcaB01g03262 Brassica carinata HOM05D003518 ORTHO05D005164 1.6e-08 62.4 53 49.1
CSS0013582 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.7e-08 61.6 38 76.3
Phvul.010G088200 Phaseolus vulgaris HOM05D003518 ORTHO05D005164 2.7e-08 61.6 60 48.3
CsaV3_3G009390 Cucumis sativus L. HOM05D003518 ORTHO05D005164 4.7e-08 60.8 57 49.1
AL4G44840 Arabidopsis lyrata HOM05D003518 ORTHO05D005164 8.0e-08 60.1 56 42.9
CARHR140890 Cardamine hirsuta HOM05D003518 ORTHO05D005164 8.0e-08 60.1 53 45.3
Aa31LG1G27140 Aethionema arabicum HOM05D003518 ORTHO05D005164 1.0e-07 59.7 55 41.8
BcaC02g07077 Brassica carinata HOM05D003518 ORTHO05D005164 1.0e-07 59.7 56 46.4
C04p71760 Brassica napus HOM05D003518 ORTHO05D005164 1.0e-07 59.7 56 46.4
MELO3C006158.2 Cucumis melo HOM05D003518 ORTHO05D005164 1.8e-07 58.9 57 47.4
Sp4g27710 Schrenkiella parvula HOM05D003518 ORTHO05D005164 2.3e-07 58.5 56 42.9
Thhalv10001388m.g Eutrema salsugineum HOM05D003518 ORTHO05D005164 4.0e-07 57.8 57 40.4
Carub.0004s2832 Capsella rubella HOM05D003518 ORTHO05D005164 5.2e-07 57.4 53 41.5
Sed0008201 Sechium edule HOM05D003518 ORTHO05D005164 5.2e-07 57.4 57 47.4
Nitab4.5_0003182g0050 Nicotiana tabacum HOM05D003518 ORTHO05D005164 2.0e-06 55.5 45 57.8
BolC4t28675H Brassica oleracea HOM05D003518 ORTHO05D005164 9.7e-06 53.1 56 42.9
Hund27333 Selenicereus undatus HOM05D003518 ORTHO05D005164 9.7e-06 53.1 55 45.5


User provided reference genes

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