Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037492 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.1e-129 464.5 256 100.0
CSS0022576 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.3e-105 386.0 256 85.9
CSS0013518 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-94 349.7 256 81.2
CSS0018351 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.3e-92 343.6 256 80.9
CSS0029998 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.6e-84 314.7 256 73.4
CSS0028764 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.7e-68 263.5 147 86.4
Rhsim01G0158900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-38 163.3 155 48.4
Rhsim01G0079900 Rhododendron simsii HOM05D005012 ORTHO05D005886 7.1e-38 161.8 155 48.4
Rhsim01G0079300 Rhododendron simsii HOM05D005012 ORTHO05D005886 4.6e-37 159.1 155 47.1
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 5.1e-36 155.6 146 47.3
Rhsim07G0167600 Rhododendron simsii HOM05D005012 ORTHO05D005886 2.5e-35 153.3 144 47.9
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.5e-32 144.1 146 45.2
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.5e-32 144.1 146 45.2
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.8e-32 142.1 152 43.4
CSS0018539 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.6e-32 141.7 150 44.0
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.9e-32 141.4 152 44.1
FvH4_4g09832 Fragaria vesca HOM05D005012 ORTHO05D005886 1.3e-31 141.0 144 45.8
CSS0042015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.7e-31 140.6 150 44.7
CSS0019574 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.2e-31 140.2 141 44.7
CSS0005185 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-31 139.8 150 44.7
CSS0013618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-31 139.8 150 44.7
CSS0022677 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-31 139.8 141 44.0
CSS0040160 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-31 139.8 150 44.7
CSS0007522 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.8e-31 139.4 150 44.0
CSS0008214 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.9e-31 139.0 159 43.4
CSS0046119 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.9e-31 139.0 159 43.4
CSS0000891 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0001231 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0003542 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0027060 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0028601 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0033025 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0033950 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0041327 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0041437 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.4e-31 138.7 152 44.1
CSS0001339 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.4e-30 137.5 159 42.8
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.4e-30 137.5 141 44.0
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.9e-30 137.1 145 46.2
FAN04G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.9e-29 131.7 123 47.2
FAN15G1881 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.9e-29 131.7 123 47.2
FAN17G1574 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.0e-28 131.3 146 43.2
Rhsim05G0024300 Rhododendron simsii HOM05D005012 ORTHO05D005886 8.7e-28 128.3 117 45.3
Rhsim05G0034600 Rhododendron simsii HOM05D005012 ORTHO05D005886 8.7e-28 128.3 117 45.3
CSS0038015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.5e-27 126.7 141 42.6
FvH4_6g37930 Fragaria vesca HOM05D005012 ORTHO05D005886 4.3e-27 125.9 117 45.3
RcHm_v2.0_Chr1g0341871 Rosa chinensis HOM05D005012 ORTHO05D005886 5.6e-27 125.6 119 46.2
Rhsim07G0133200 Rhododendron simsii HOM05D005012 ORTHO05D005886 2.8e-26 123.2 144 44.4
FAN11G2763 Fragaria x ananassa HOM05D005012 ORTHO05D008319 8.2e-26 121.7 117 43.6
FAN16G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-25 120.9 146 41.8
FAN28G1702 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.4e-25 120.2 124 45.2
Rhsim09G0006300 Rhododendron simsii HOM05D005012 ORTHO05D005886 4.0e-25 119.4 151 41.1
FAN20G1519 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.5e-24 117.5 146 40.4
FAN12G0378 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.0e-23 114.8 144 41.0
FvH4_1g28181 Fragaria vesca HOM05D005012 ORTHO05D005886 2.2e-23 113.6 117 43.6
Rhsim05G0112900 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.1e-22 111.3 112 46.4
FAN22G1849 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-22 110.9 137 41.6
FvH4_1g28940 Fragaria vesca HOM05D005012 ORTHO05D005886 4.6e-21 105.9 97 49.5
vmacro22380 Vaccinium macrocarpon HOM05D005012 ORTHO05D005886 1.0e-20 104.8 146 40.4
CSS0037011 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.3e-20 104.4 107 44.9
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-20 104.0 97 48.5
FAN26G2139 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.8e-20 104.0 97 48.5
CSS0035704 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.0e-20 103.2 144 38.9
FAN15G1928 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.9e-20 102.8 97 48.5
FAN04G2098 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.7e-20 102.1 97 47.4
FAN04G2305 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.7e-20 102.1 104 46.2
CSS0007280 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.1e-19 101.3 144 38.2
CSS0040728 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.5e-19 100.9 144 38.2
FAN13G1160 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.5e-19 100.1 99 47.5
CSS0030618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.4e-19 98.6 144 38.2
FAN17G1975 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.1e-17 93.2 86 43.0
FAN07G2178 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.1e-17 92.8 97 44.3
RcHm_v2.0_Chr1g0322131 Rosa chinensis HOM05D005012 ORTHO05D005886 4.1e-17 92.8 117 33.3
Prupe.1G266100 Prunus persica HOM05D005012 ORTHO05D000385 2.6e-16 90.1 141 28.4
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 2.6e-16 90.1 141 28.4
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 3.4e-16 89.7 129 34.1
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 3.4e-16 89.7 129 34.1
FvH4_3g22860 Fragaria vesca HOM05D005012 ORTHO05D005886 2.2e-15 87.0 146 31.5
Rhsim01G0081500 Rhododendron simsii HOM05D005012 ORTHO05D005886 2.5e-14 83.6 133 36.1
TWI77G0909 Tripterygium wilfordii HOM05D005012 ORTHO05D005886 1.6e-13 80.9 75 48.0
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 2.7e-13 80.1 137 29.9
FAN19G1173 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.6e-13 79.7 75 49.3
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.6e-13 79.3 150 28.0
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.1e-11 74.7 134 32.8
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 1.5e-11 74.3 134 30.6
CSS0009064 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.3e-11 73.2 107 37.4
vmacro14094 Vaccinium macrocarpon HOM05D000012 ORTHO05D000978 4.3e-11 72.8 87 44.8
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 5.7e-11 72.4 148 29.7
CSS0010423 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.4e-11 72.0 152 30.9
CSS0016088 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.7e-11 71.6 152 30.9
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.2e-10 70.5 143 30.8
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 2.2e-10 70.5 151 27.8
RcHm_v2.0_Chr7g0222641 Rosa chinensis HOM05D005012 ORTHO05D005886 2.2e-10 70.5 146 29.5
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 2.8e-10 70.1 147 27.2
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 2.8e-10 70.1 99 32.3
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 2.8e-10 70.1 99 32.3
FAN26G2799 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.8e-10 70.1 68 45.6
Dinv19999 Davidia involucrata HOM05D010146 ORTHO05D000385 4.8e-10 69.3 99 31.3
AUR62020782 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.3e-10 68.9 133 31.6
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 6.3e-10 68.9 147 28.6
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 2.4e-09 67.0 121 30.6
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 2.4e-09 67.0 121 30.6
FAN16G2301 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.4e-09 67.0 109 37.6
Rhsim11G0067500 Rhododendron simsii HOM05D010774 ORTHO05D013539 1.2e-08 64.7 129 27.9
AUR62031856 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.5e-08 64.3 133 30.8
arahy.Tifrunner.gnm1.ann1.U7U33W Arachis hypogaea HOM05D010482 ORTHO05D000385 2.0e-08 63.9 157 26.8
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 2.0e-08 63.9 118 27.1
Sopen04g018890 Solanum pennellii HOM05D007930 ORTHO05D007166 2.0e-08 63.9 117 28.2
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 2.6e-08 63.5 150 26.0
Sc08g0005540 Simmondsia chinensis HOM05D004615 ORTHO05D000385 2.6e-08 63.5 112 31.2
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.4e-08 63.2 147 24.5
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.4e-08 63.2 150 24.7
Cc00_g05340 Coffea canephora HOM05D005012 ORTHO05D005886 7.7e-08 62.0 122 26.2
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 7.7e-08 62.0 104 32.7
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.0e-07 61.6 116 27.6
arahy.Tifrunner.gnm1.ann1.CXU7YK Arachis hypogaea HOM05D010482 ORTHO05D000385 1.3e-07 61.2 125 29.6
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.3e-07 61.2 163 25.8
CSS0005612 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.3e-07 61.2 144 27.1
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.3e-07 61.2 150 24.7
Hund24609 Selenicereus undatus HOM05D001385 ORTHO05D008760 3.8e-07 59.7 94 31.9
PSO349G0081 Papaver somniferum HOM05D001309 ORTHO05D000385 5.0e-07 59.3 130 32.3
Hund06374 Selenicereus undatus HOM05D001385 ORTHO05D004434 5.0e-07 59.3 117 29.1
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 6.5e-07 58.9 131 29.0
CSS0044513 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 6.5e-07 58.9 144 26.4
AUR62012549 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.5e-07 58.9 133 29.3
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.5e-07 58.9 150 24.7
Hund20142 Selenicereus undatus HOM05D001385 ORTHO05D008760 8.5e-07 58.5 117 27.4
Hund22136 Selenicereus undatus HOM05D001385 ORTHO05D004434 8.5e-07 58.5 96 30.2
vmacro03774 Vaccinium macrocarpon HOM05D005012 ORTHO05D005886 1.1e-06 58.2 107 33.6
CSS0044099 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.9e-06 57.4 144 27.1
Os10g0195100 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.9e-06 57.4 117 27.4
Os12g0417000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.9e-06 57.4 117 27.4
AUR62033658 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.5e-06 57.0 73 39.7
FvH4_1g29802 Fragaria vesca HOM05D005012 ORTHO05D005886 2.5e-06 57.0 52 48.1
TAR629G2892 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.5e-06 57.0 71 39.4
CSS0024121 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 3.2e-06 56.6 145 28.3
CSS0038787 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 3.2e-06 56.6 145 28.3
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.2e-06 56.6 151 24.5
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-06 56.6 116 31.9
FAN04G0818 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.2e-06 55.5 56 46.4
Hund31150 Selenicereus undatus HOM05D004615 ORTHO05D000385 7.2e-06 55.5 116 27.6


User provided reference genes

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