Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1481.5 757 100.0
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1264.2 758 86.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1259.2 757 85.3
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1250.3 772 83.8
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1239.9 760 83.6
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1201.8 801 78.9
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1173.7 758 79.4
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1170.2 757 78.2
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1169.5 758 79.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1160.6 758 78.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1157.9 747 78.2
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 0.0e+00 1152.1 709 82.8
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1151.3 774 76.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1151.0 757 76.8
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1148.3 759 77.7
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1144.4 757 76.1
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1140.2 759 76.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1133.6 759 76.9
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1130.5 749 76.6
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1127.5 756 77.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1120.1 752 76.1
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1119.4 749 75.8
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 0.0e+00 1116.7 766 74.9
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1114.0 757 75.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1113.6 758 75.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1113.2 758 75.6
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 0.0e+00 1113.2 756 76.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 0.0e+00 1112.8 761 75.0
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1112.4 749 74.8
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 0.0e+00 1111.3 750 75.3
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1110.5 758 75.5
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 0.0e+00 1110.1 756 75.1
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1109.4 751 74.7
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1107.0 751 74.4
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1105.5 749 74.2
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1104.4 751 74.0
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 746 75.7
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1103.6 743 75.1
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1101.3 749 76.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 754 73.5
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 754 73.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 757 73.6
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 751 73.6
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1096.3 755 72.8
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1095.9 774 73.5
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1095.1 774 73.5
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1094.7 762 74.1
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1094.3 759 74.3
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1092.0 755 73.8
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1090.1 757 74.0
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1089.7 757 74.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1086.6 765 74.5
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1086.6 765 74.9
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 0.0e+00 1085.1 745 73.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1082.0 751 73.2
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 0.0e+00 1078.5 753 74.2
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1078.5 751 72.8
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1077.0 757 72.3
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 5.2e-312 1073.9 757 72.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 4.7e-311 1070.8 757 73.2
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.2e-311 1070.5 757 72.3
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 6.2e-311 1070.5 767 73.0
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.5e-309 1065.8 760 71.8
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 5.7e-309 1063.9 746 73.2
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.3e-308 1062.8 751 71.4
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.3e-308 1062.8 757 70.0
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 757 69.9
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 767 72.8
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.8e-308 1061.6 758 72.8
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.0e-306 1055.4 760 72.1
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 7.6e-306 1053.5 758 71.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.0e-305 1053.1 745 74.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.3e-305 1052.7 759 72.1
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.1e-304 1049.7 760 70.8
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 5.1e-302 1040.8 765 72.2
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 7.4e-301 1036.9 760 70.7
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 757 69.6
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 7.7e-298 1026.9 756 69.7
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.3e-297 1026.2 687 76.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.2e-296 1021.5 768 70.3
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 5.7e-293 1010.7 760 69.1
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 5.7e-293 1010.7 760 69.1
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 9.1e-291 1003.4 758 68.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 3.4e-290 1001.5 760 68.6
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 7.7e-290 1000.3 758 67.9
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 7.7e-290 1000.3 758 67.9
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 5.0e-289 997.7 765 68.2
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 5.0e-289 997.7 765 68.2
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.9e-288 995.7 783 67.2
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 4.2e-288 994.6 760 67.2
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 4.2e-288 994.6 760 67.2
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.0e-286 989.9 753 67.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 8.2e-284 980.3 756 66.7
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.7e-278 960.7 774 66.4
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 3.6e-271 938.3 735 66.5
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.6e-269 932.2 636 73.6
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 5.7e-269 931.0 749 64.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.5e-269 930.6 659 71.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.3e-265 919.8 708 68.5
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 2.8e-263 912.1 757 64.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 6.8e-262 907.5 762 62.2
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 9.8e-261 903.7 761 61.6
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.8e-259 899.4 528 85.4
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 9.2e-259 897.1 748 61.9
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-258 896.7 750 62.7
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-258 896.7 753 62.9
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.2e-258 896.7 753 62.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 5.9e-258 894.4 749 62.9
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 6.6e-257 891.0 821 58.8
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 7.0e-251 870.9 724 63.1
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.3e-249 865.9 528 83.3
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.9e-236 821.6 644 66.5
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.2e-234 817.0 754 56.8
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.3e-228 797.0 536 74.6
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.2e-227 792.3 759 57.0
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.6e-223 780.0 713 59.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 9.6e-216 754.2 759 54.0
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 9.0e-214 747.7 534 69.7
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.0e-213 746.5 548 71.9
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.2e-211 739.2 747 52.3
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.3e-209 733.0 756 52.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 4.3e-200 702.2 753 54.2
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.5e-195 686.4 732 51.0
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 4.5e-157 559.3 382 75.9
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 3.0e-153 546.6 611 49.9
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 3.4e-136 490.0 345 70.4
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 7.8e-133 478.8 389 64.0
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 9.9e-120 435.3 479 52.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 6.0e-117 426.0 734 35.8
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.3e-100 370.9 345 60.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.6e-93 348.2 755 29.9
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 7.1e-86 322.8 834 31.2
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.4e-80 303.9 224 72.3
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.6e-77 293.5 532 39.1
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.3e-60 238.0 222 60.8
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.7e-45 188.0 197 54.3
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 4.1e-41 174.1 124 70.2
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.7e-40 171.4 193 51.3
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 6.1e-37 160.2 136 61.0
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.4e-36 159.1 99 81.8
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.7e-34 152.1 113 68.1
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 3.5e-32 144.4 216 43.5
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 7.7e-32 143.3 218 44.5
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.0e-31 142.9 102 67.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.8e-29 134.8 139 55.4
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 4.0e-28 131.0 80 81.2
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.2e-24 119.4 246 38.6
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.3e-22 110.9 75 73.3
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.1e-20 104.8 92 60.9
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.5e-19 102.4 98 53.1
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 3.4e-19 101.3 122 46.7
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.1e-17 96.3 130 40.8
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 3.9e-15 87.8 79 55.7
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-14 85.9 101 47.5
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 6.2e-13 80.5 67 59.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.0e-11 75.5 64 60.9
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 9.8e-11 73.2 56 66.1
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 1.7e-10 72.4 55 61.8
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.6e-08 65.9 65 52.3
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.6e-08 65.9 65 52.3
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 1.0e-07 63.2 65 50.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 5.1e-07 60.8 63 50.8


User provided reference genes

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