Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037451 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D110526 6.6e-50 200.3 93 100.0
Dinv42368 Davidia involucrata HOM05D001787 ORTHO05D003488 5.1e-10 67.8 39 76.9
Nitab4.5_0010890g0010 Nicotiana tabacum HOM05D001787 ORTHO05D003488 2.5e-09 65.5 39 74.4
Peaxi162Scf00219g00512 Petunia axillaris HOM05D001787 ORTHO05D003488 2.5e-09 65.5 39 74.4
Rhsim03G0230100 Rhododendron simsii HOM05D001787 ORTHO05D003488 4.3e-09 64.7 39 74.4
SalBow1G2786 Salvia bowleyana HOM05D001787 ORTHO05D003488 5.6e-09 64.3 39 71.8
Solyc07g041280.4 Solanum lycopersicum HOM05D001787 ORTHO05D003488 7.3e-09 63.9 39 71.8
Sopen07g020590 Solanum pennellii HOM05D001787 ORTHO05D003488 7.3e-09 63.9 39 71.8
PGSC0003DMG400019574 Solanum tuberosum HOM05D001787 ORTHO05D003488 7.3e-09 63.9 39 71.8
MSTRG.10525 Avicennia marina HOM05D001787 ORTHO05D003488 9.6e-09 63.5 39 71.8
Migut.L01543 Erythranthe guttata HOM05D001787 ORTHO05D003488 9.6e-09 63.5 39 71.8
CiPaw.15G090300 Carya illinoinensis HOM05D001787 ORTHO05D003488 1.3e-08 63.2 39 74.4
Haze_18124 Corylus avellana HOM05D001787 ORTHO05D003488 1.3e-08 63.2 39 74.4
Prupe.1G406400 Prunus persica HOM05D001787 ORTHO05D003488 1.3e-08 63.2 39 74.4
GSVIVG01035444001 Vitis vinifera HOM05D001787 ORTHO05D003488 1.3e-08 63.2 39 74.4
FAN20G1398 Fragaria x ananassa HOM05D001787 ORTHO05D003488 1.6e-08 62.8 39 74.4
Peaxi162Scf00809g00036 Petunia axillaris HOM05D001787 ORTHO05D003488 1.6e-08 62.8 39 74.4
Actinidia29918 Actinidia chinensis HOM05D001787 ORTHO05D003488 2.8e-08 62.0 39 74.4
EL10Ac8g19134 Beta vulgaris HOM05D001787 ORTHO05D003488 2.8e-08 62.0 39 71.8
DCAR_000814 Daucus carota HOM05D001787 ORTHO05D003488 2.8e-08 62.0 39 71.8
Nn8g38721 Nelumbo nucifera HOM05D001787 ORTHO05D003488 2.8e-08 62.0 39 74.4
Ah.10g034000 Amaranthus hybridus HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
EL10Ac2g03801 Beta vulgaris HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
AUR62009096 Chenopodium quinoa HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
AUR62020575 Chenopodium quinoa HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Dinv41832 Davidia involucrata HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
ECA234G2841 Erigeron canadensis HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Eucgr.C00706 Eucalyptus grandis HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
FvH4_2g31270 Fragaria vesca HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
FAN24G0956 Fragaria x ananassa HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
FAN27G0678 Fragaria x ananassa HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Gohir.A05G039600 Gossypium hirsutum HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Gohir.D05G041100 Gossypium hirsutum HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Gorai.009G041600 Gossypium raimondii HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
MD08G1069600 Malus domestica HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
MD15G1052400 Malus domestica HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
MD15G1052500 Malus domestica HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Nn6g35589 Nelumbo nucifera HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Nitab4.5_0004953g0080 Nicotiana tabacum HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
PGR031G0779 Punica granatum HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
RcHm_v2.0_Chr6g0311531 Rosa chinensis HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
Sed0025039 Sechium edule HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
TAR624G1095 Trochodendron aralioides HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 71.8
unitig_85.g27252 Utricularia gibba HOM05D001787 ORTHO05D003488 3.6e-08 61.6 39 69.2
Actinidia38464 Actinidia chinensis HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Aa31LG3G15190 Aethionema arabicum HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
AT5G12040 Arabidopsis thaliana HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
BcaB01g05433 Brassica carinata HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
A03p05370 Brassica napus HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
C03p06190 Brassica napus HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
BolC3t13126H Brassica oleracea HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
BraA03t09875Z Brassica rapa HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Carub.0006s1056 Capsella rubella HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Ciclev10008710m.g Citrus clementina HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Duzib168G1000 Durio zibethinus HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Thhalv10013923m.g Eutrema salsugineum HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
PSO210G6170 Papaver somniferum HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Sp6g31560 Schrenkiella parvula HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Sc18g0002390 Simmondsia chinensis HOM05D001787 ORTHO05D003488 4.8e-08 61.2 39 71.8
Zm00001eb402000 Zea mays HOM05D001787 ORTHO05D003488 6.2e-08 60.8 39 71.8
arahy.Tifrunner.gnm1.ann1.0IZ382 Arachis hypogaea HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
Glyma.06G055100 Glycine max HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
HanXRQChr10g0303441 Helianthus annuus HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
Lalb_Chr11g0063301 Lupinus albus HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
Nitab4.5_0013731g0010 Nicotiana tabacum HOM05D001787 ORTHO05D003488 8.1e-08 60.5 42 66.7
Oeu003980.1 Olea europaea HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 71.8
Os03g0175600 Oryza sativa ssp. japonica HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
Phvul.009G081000 Phaseolus vulgaris HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
TPR.G3515 Trifolium pratense HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
TWI63G1842 Tripterygium wilfordii HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
HPP92_007990 Vanilla planifolia HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 71.8
VMungo1309G1305 Vigna mungo HOM05D001787 ORTHO05D003488 8.1e-08 60.5 39 69.2
arahy.Tifrunner.gnm1.ann1.DZ6J9T Arachis hypogaea HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 66.7
PSO063G6311 Papaver somniferum HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 69.2
PSO421G0350 Papaver somniferum HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 69.2
Psat5g035080 Pisum sativum HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 69.2
Hund03302 Selenicereus undatus HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 69.2
SGA_v2.0_scaffold163G38003 Striga asiatica HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 69.2
Thecc.09G060900 Theobroma cacao HOM05D001787 ORTHO05D003488 1.1e-07 60.1 39 69.2
Duzib150G0917 Durio zibethinus HOM05D001787 ORTHO05D003488 1.4e-07 59.7 39 71.8
Potri.006G222900 Populus trichocarpa HOM05D001787 ORTHO05D003488 1.4e-07 59.7 39 71.8
SGA_v2.0_scaffold21G09471 Striga asiatica HOM05D001787 ORTHO05D003488 1.4e-07 59.7 39 69.2
TAR633G0053 Trochodendron aralioides HOM05D001787 ORTHO05D003488 1.4e-07 59.7 39 69.2
Actinidia25700 Actinidia chinensis HOM05D001787 ORTHO05D003488 1.8e-07 59.3 39 69.2
ATR0598G171 Amborella trichopoda HOM05D001787 ORTHO05D003488 1.8e-07 59.3 39 66.7
MBI19_g20415_MAGBIO Magnolia biondii HOM05D001787 ORTHO05D003488 1.8e-07 59.3 39 69.2
Mapoly0001s0148 Marchantia polymorpha HOM05D001787 ORTHO05D003488 1.8e-07 59.3 39 69.2
SalBow1G1427 Salvia bowleyana HOM05D001787 ORTHO05D003488 1.8e-07 59.3 39 69.2
BcaC03g13408 Brassica carinata HOM05D001787 ORTHO05D003488 2.4e-07 58.9 39 69.2
C02p05580 Brassica napus HOM05D001787 ORTHO05D003488 2.4e-07 58.9 39 69.2
CANSAT25G0744 Cannabis sativa HOM05D001787 ORTHO05D003488 2.4e-07 58.9 39 69.2
Migut.E01575 Erythranthe guttata HOM05D001787 ORTHO05D003488 2.4e-07 58.9 39 69.2
Sc06g0001080 Simmondsia chinensis HOM05D001787 ORTHO05D003488 2.4e-07 58.9 39 66.7
Zm00001eb005710 Zea mays HOM05D001787 ORTHO05D003488 2.4e-07 58.9 39 69.2
AL6G22830 Arabidopsis lyrata HOM05D001787 ORTHO05D003488 3.1e-07 58.5 39 69.2
Cc08_g01340 Coffea canephora HOM05D001787 ORTHO05D003488 3.1e-07 58.5 39 69.2
PSO210G0001 Papaver somniferum HOM05D001787 ORTHO05D003488 3.1e-07 58.5 39 69.2
Sabra06G0172300 Salix brachista HOM05D001787 ORTHO05D003488 3.1e-07 58.5 39 69.2
MSTRG.1688 Avicennia marina HOM05D001787 ORTHO05D003488 4.0e-07 58.2 39 69.2
Ca_15840_v3 Cicer arietinum L. HOM05D001787 ORTHO05D003488 4.0e-07 58.2 39 66.7
Cc06_g11880 Coffea canephora HOM05D001787 ORTHO05D003488 4.0e-07 58.2 39 66.7
Gohir.D07G020300 Gossypium hirsutum HOM05D001787 ORTHO05D003488 4.0e-07 58.2 39 69.2
Gorai.001G021100 Gossypium raimondii HOM05D001787 ORTHO05D003488 4.0e-07 58.2 39 69.2
Sed0024349 Sechium edule HOM05D001787 ORTHO05D003488 5.3e-07 57.8 39 69.2
THA.LOC104811224 Tarenaya hassleriana HOM05D001787 ORTHO05D003488 5.3e-07 57.8 39 69.2
TWI34G1008 Tripterygium wilfordii HOM05D001787 ORTHO05D003488 5.3e-07 57.8 39 66.7
Aqoxy7G01096 Aquilegia oxysepala HOM05D001787 ORTHO05D003488 6.9e-07 57.4 39 69.2
Duzib187G1874 Durio zibethinus HOM05D001787 ORTHO05D003488 6.9e-07 57.4 39 66.7
Hma1.2p1_0231F.1_g097470 Hydrangea macrophylla HOM05D001787 ORTHO05D003488 6.9e-07 57.4 39 66.7
Hund08712 Selenicereus undatus HOM05D001787 ORTHO05D003488 6.9e-07 57.4 39 66.7
Medtr3g104850 Medicago truncatula HOM05D001787 ORTHO05D003488 9.0e-07 57.0 39 66.7
FAN15G0901 Fragaria x ananassa HOM05D001787 ORTHO05D003488 1.2e-06 56.6 41 68.3
Lj1g0020987 Lotus japonicus HOM05D001787 ORTHO05D003488 1.5e-06 56.2 39 64.1
Pp3c16_17560 Physcomitrium patens HOM05D001787 ORTHO05D003488 2.0e-06 55.8 39 61.5
MELO3C016902.2 Cucumis melo HOM05D001787 ORTHO05D003488 3.4e-06 55.1 39 64.1
CsaV3_4G035950 Cucumis sativus L. HOM05D001787 ORTHO05D003488 3.4e-06 55.1 39 64.1
Solyc08g062190.3 Solanum lycopersicum HOM05D001787 ORTHO05D003488 3.4e-06 55.1 39 64.1
Sopen08g017770 Solanum pennellii HOM05D001787 ORTHO05D003488 3.4e-06 55.1 39 64.1
CDE05G2002 Ceratophyllum demersum HOM05D001762 ORTHO05D001774 4.4e-06 54.7 39 64.1
ClCG05G015620 Citrullus lanatus HOM05D001787 ORTHO05D003488 4.4e-06 54.7 39 64.1
SMO116G0031 Selaginella moellendorffii HOM05D001787 ORTHO05D003488 5.8e-06 54.3 38 65.8
BolC2t06502H Brassica oleracea HOM05D001787 ORTHO05D003488 7.6e-06 53.9 30 76.7
vmacro06317 Vaccinium macrocarpon HOM05D001787 ORTHO05D003488 7.6e-06 53.9 30 76.7
Lj7A240G29 Lonicera japonica HOM05D001787 ORTHO05D003488 9.9e-06 53.5 24 91.7


User provided reference genes

Program Settings