Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 8.9e-176 620.2 312 100.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.3e-130 468.8 313 75.4
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.4e-127 458.8 313 74.4
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.6e-119 432.6 315 72.1
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.9e-118 429.1 324 70.1
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.9e-115 418.7 312 68.6
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 2.6e-114 416.0 312 69.9
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.9e-110 402.5 304 68.4
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.9e-108 394.4 249 80.3
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.3e-105 387.1 313 65.5
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.2e-102 376.3 315 64.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 6.5e-102 374.8 315 63.5
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.2e-100 370.5 318 62.3
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.4e-99 367.1 316 61.1
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.0e-99 365.9 313 62.6
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.2e-99 365.2 312 61.9
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 6.3e-97 358.2 314 61.8
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.1e-96 357.5 312 59.9
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.8e-96 356.7 313 59.4
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 3.1e-96 355.9 313 61.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 5.9e-95 351.7 312 58.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.9e-94 349.4 313 60.1
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 4.2e-93 345.5 300 61.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 4.0e-91 339.0 302 60.9
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.2e-90 337.4 312 57.7
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.6e-87 327.0 345 53.3
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 2.0e-87 326.6 261 64.4
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 5.9e-87 325.1 254 68.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.2e-86 323.2 265 64.2
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.8e-86 322.4 272 63.2
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 6.5e-86 321.6 248 68.5
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.5e-85 320.5 272 62.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 2.5e-85 319.7 209 76.6
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.2e-85 318.9 313 57.8
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 7.2e-85 318.2 254 66.9
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 9.5e-85 317.8 272 62.5
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.6e-84 317.0 253 64.0
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 6.1e-84 315.1 264 63.6
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.8e-83 313.5 217 69.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 4.0e-83 312.4 268 62.3
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.2e-83 312.0 305 55.1
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.8e-83 311.2 260 63.5
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.5e-82 310.5 232 67.2
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.6e-82 309.7 257 62.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 3.4e-82 309.3 250 63.6
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.4e-82 309.3 315 55.2
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 7.5e-82 308.1 232 66.8
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 7.5e-82 308.1 315 54.3
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 9.8e-82 307.8 206 73.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 9.8e-82 307.8 239 64.0
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 4.9e-81 305.4 186 79.6
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 6.3e-81 305.1 255 62.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 6.3e-81 305.1 264 60.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 6.3e-81 305.1 246 65.4
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.4e-80 303.9 193 75.1
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.4e-80 303.1 252 60.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.1e-80 302.8 197 75.6
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 3.1e-80 302.8 197 75.6
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 5.4e-80 302.0 197 75.1
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 7.0e-80 301.6 238 63.4
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.2e-79 300.8 224 67.0
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.0e-79 300.1 198 72.2
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.7e-79 299.7 268 61.2
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.5e-79 299.3 197 74.1
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 4.5e-79 298.9 199 71.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 6.6e-78 295.0 213 67.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 8.6e-78 294.7 307 56.0
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.5e-77 293.9 252 59.5
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.9e-77 293.5 252 59.5
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.9e-77 293.5 254 57.9
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 9.5e-77 291.2 318 51.9
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 9.5e-77 291.2 223 68.6
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 4.7e-76 288.9 195 74.9
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 8.0e-76 288.1 187 74.3
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.0e-75 287.7 226 63.3
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.0e-75 287.7 248 58.5
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 3.0e-75 286.2 174 79.3
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 4.0e-75 285.8 188 72.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 5.2e-75 285.4 231 65.8
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 8.9e-75 284.6 186 73.1
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 8.9e-75 284.6 195 74.9
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.0e-74 283.5 197 71.6
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.4e-74 282.7 233 62.2
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 7.5e-74 281.6 213 65.7
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 9.8e-74 281.2 187 72.7
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-73 280.8 249 59.4
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.3e-73 280.8 186 73.7
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.3e-73 280.8 203 68.0
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.7e-73 280.4 205 66.3
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 2.9e-73 279.6 192 72.9
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 3.7e-73 279.3 287 52.6
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.4e-73 278.5 232 64.2
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.1e-72 277.7 194 71.6
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.8e-72 276.9 202 66.8
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.8e-72 276.9 198 70.7
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.2e-72 276.2 208 66.3
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 4.1e-72 275.8 212 63.7
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.1e-72 275.8 246 57.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.1e-72 275.8 246 57.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 7.0e-72 275.0 182 72.5
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.2e-72 274.6 186 70.4
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.2e-72 274.6 186 70.4
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.7e-71 273.1 287 51.9
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.3e-70 270.8 187 73.3
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 3.9e-70 269.2 229 62.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 6.6e-70 268.5 192 70.8
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.1e-69 267.7 169 75.7
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.9e-67 258.1 252 54.4
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 8.9e-67 258.1 212 58.5
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 9.8e-66 254.6 160 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 7.0e-64 248.4 179 67.0
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 5.0e-62 242.3 230 55.7
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.1e-61 241.1 191 66.0
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 4.7e-60 235.7 284 49.6
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 9.8e-58 228.0 134 79.9
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.2e-57 226.9 175 62.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.2e-55 221.1 156 71.8
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.2e-55 221.1 188 61.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 3.5e-55 219.5 159 70.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.3e-54 217.6 138 75.4
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 3.0e-54 216.5 180 65.0
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.6e-53 212.2 109 91.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 3.1e-51 206.5 156 68.6
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.9e-46 189.5 118 76.3
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.1e-39 167.2 93 86.0
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.0e-39 165.6 114 74.6
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.0e-39 165.6 129 69.0
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-37 159.8 250 40.8
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-34 150.6 240 42.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 7.9e-31 138.7 92 68.5
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-29 134.8 109 66.1
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 7.4e-29 132.1 161 46.0
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 9.0e-27 125.2 133 43.6
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.6e-26 123.6 137 44.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.4e-26 123.2 166 39.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.2e-23 114.8 96 62.5
CSS0048018 Camellia sinensis var. sinensis HOM05D043540 ORTHO05D006480 1.6e-20 104.4 89 64.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 8.2e-20 102.1 89 58.4
CSS0006054 Camellia sinensis var. sinensis HOM05D043540 ORTHO05D006480 1.8e-19 100.9 89 64.0
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-16 90.9 199 37.2
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 4.2e-16 89.7 87 57.5
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 9.0e-11 72.0 41 75.6
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 2.9e-09 67.0 58 62.1
PGSC0003DMG402012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 2.9e-09 67.0 77 49.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 3.8e-09 66.6 38 78.9
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-08 64.7 121 38.8
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 8.7e-06 55.5 108 39.8


User provided reference genes

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