Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 2.7e-91 338.6 161 100.0
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 9.6e-65 250.4 131 84.7
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 3.6e-64 248.4 131 84.0
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 4.7e-64 248.1 131 84.0
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 6.2e-64 247.7 131 83.2
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 8.1e-64 247.3 131 82.4
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 1.1e-63 246.9 131 83.2
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 1.8e-63 246.1 131 83.2
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 1.8e-63 246.1 131 82.4
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 3.1e-63 245.4 131 83.2
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 3.1e-63 245.4 131 83.2
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 5.2e-63 244.6 130 83.8
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 6.9e-63 244.2 131 81.7
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 6.9e-63 244.2 131 80.9
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 6.9e-63 244.2 131 80.9
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 6.9e-63 244.2 131 83.2
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.2e-62 243.4 131 80.9
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 1.2e-62 243.4 131 80.9
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 1.2e-62 243.4 131 83.2
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.2e-62 243.4 131 81.7
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.2e-62 243.4 131 82.4
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.5e-62 243.0 131 81.7
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.5e-62 243.0 129 83.7
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.0e-62 242.7 131 80.9
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 2.6e-62 242.3 130 82.3
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 3.4e-62 241.9 136 77.9
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 3.4e-62 241.9 131 81.7
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 4.4e-62 241.5 131 80.2
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 4.4e-62 241.5 131 80.9
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 4.4e-62 241.5 130 81.5
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 5.8e-62 241.1 131 82.4
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 5.8e-62 241.1 131 82.4
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 5.8e-62 241.1 131 80.9
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 5.8e-62 241.1 131 80.2
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 7.6e-62 240.7 131 80.9
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 7.6e-62 240.7 131 80.2
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 9.9e-62 240.4 131 80.2
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 9.9e-62 240.4 131 80.2
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 9.9e-62 240.4 131 80.2
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 9.9e-62 240.4 129 82.9
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 1.7e-61 239.6 131 78.6
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 1.7e-61 239.6 131 79.4
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 1.7e-61 239.6 136 77.2
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 2.2e-61 239.2 131 80.2
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 2.9e-61 238.8 131 79.4
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 2.9e-61 238.8 131 79.4
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 3.8e-61 238.4 130 80.0
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 3.8e-61 238.4 131 78.6
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 3.8e-61 238.4 134 76.1
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 3.8e-61 238.4 131 79.4
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 4.9e-61 238.0 131 78.6
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 4.9e-61 238.0 131 78.6
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 4.9e-61 238.0 131 78.6
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 4.9e-61 238.0 131 79.4
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 6.4e-61 237.7 131 78.6
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 6.4e-61 237.7 131 78.6
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 6.4e-61 237.7 131 78.6
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 6.4e-61 237.7 131 78.6
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 6.4e-61 237.7 130 80.8
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 6.4e-61 237.7 131 78.6
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 8.4e-61 237.3 131 79.4
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 8.4e-61 237.3 131 80.9
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 8.4e-61 237.3 131 77.9
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 8.4e-61 237.3 131 78.6
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 1.1e-60 236.9 131 78.6
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.1e-60 236.9 133 77.4
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 1.1e-60 236.9 131 78.6
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 1.4e-60 236.5 131 78.6
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 1.4e-60 236.5 131 78.6
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 1.4e-60 236.5 131 77.9
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 1.4e-60 236.5 131 77.9
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.9e-60 236.1 129 81.4
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 1.9e-60 236.1 131 79.4
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 1.9e-60 236.1 131 78.6
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 2.4e-60 235.7 131 77.9
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 2.4e-60 235.7 131 77.9
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 2.4e-60 235.7 131 77.9
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 2.4e-60 235.7 131 77.9
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 2.4e-60 235.7 131 77.9
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 3.2e-60 235.3 131 78.6
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 4.2e-60 235.0 131 78.6
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 4.2e-60 235.0 131 77.9
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 4.2e-60 235.0 130 80.8
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 5.4e-60 234.6 131 77.9
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 5.4e-60 234.6 131 77.9
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 7.1e-60 234.2 133 76.7
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 7.1e-60 234.2 131 78.6
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 7.1e-60 234.2 130 77.7
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 9.3e-60 233.8 131 77.1
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 1.2e-59 233.4 130 80.0
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.6e-59 233.0 133 76.7
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 1.6e-59 233.0 131 77.1
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 2.1e-59 232.6 141 73.0
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 3.5e-59 231.9 129 78.3
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 3.5e-59 231.9 131 76.3
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 4.6e-59 231.5 131 75.6
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 4.6e-59 231.5 129 77.5
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 4.6e-59 231.5 133 73.7
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 7.8e-59 230.7 130 76.9
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 7.8e-59 230.7 131 76.3
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 1.0e-58 230.3 131 77.9
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 1.0e-58 230.3 131 77.1
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 1.3e-58 229.9 141 70.9
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 1.3e-58 229.9 131 77.9
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 1.7e-58 229.6 131 77.1
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 3.9e-58 228.4 123 81.3
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 3.9e-58 228.4 131 74.8
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 5.1e-58 228.0 129 76.7
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 5.1e-58 228.0 131 75.6
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 5.1e-58 228.0 131 75.6
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 6.6e-58 227.6 131 74.8
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 1.5e-57 226.5 131 75.6
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 5.6e-57 224.6 130 73.1
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 5.6e-57 224.6 131 73.3
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 5.6e-57 224.6 127 75.6
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 3.6e-56 221.9 131 74.0
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 3.6e-56 221.9 131 72.5
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 3.6e-56 221.9 130 76.2
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 4.8e-56 221.5 131 73.3
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 8.1e-56 220.7 131 70.2
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 8.1e-56 220.7 131 72.5
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.4e-55 219.9 131 69.5
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.4e-55 219.9 131 69.5
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 1.8e-55 219.5 128 74.2
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 1.5e-54 216.5 128 73.4
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 4.5e-54 214.9 131 71.0
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 4.5e-54 214.9 130 72.3
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 7.6e-54 214.2 129 71.3
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 1.3e-53 213.4 141 67.4
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 6.4e-53 211.1 126 70.6
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 1.1e-52 210.3 128 71.1
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 3.2e-52 208.8 116 78.4
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 4.2e-52 208.4 131 70.2
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 5.4e-52 208.0 136 67.6
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 1.8e-50 203.0 136 66.9
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 1.1e-49 200.3 130 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 6.2e-48 194.5 128 66.4
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 1.4e-47 193.4 141 62.4
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 2.0e-46 189.5 128 65.6
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 4.2e-44 181.8 97 82.5
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 4.8e-40 168.3 127 60.6
Cpa.g.sc90.39 Carica papaya HOM05D003542 ORTHO05D004799 9.0e-39 164.1 86 81.4
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 8.4e-37 157.5 128 53.1
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 1.4e-36 156.8 129 55.8
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 7.4e-33 144.4 130 50.8
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.1e-31 140.6 129 50.4
Os03g0586300 Oryza sativa ssp. japonica HOM05D003542 ORTHO05D004799 1.0e-29 134.0 86 67.4
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.8e-29 132.1 128 51.6
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.5e-28 129.4 135 45.9
DCAR_000719 Daucus carota HOM05D000001 ORTHO05D000003 6.3e-24 114.8 86 61.6
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 5.3e-23 111.7 129 41.1
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 6.9e-23 111.3 116 48.3
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 5.0e-21 105.1 118 45.8
PRCOL_00005418 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 4.8e-16 88.6 138 41.3
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 2.0e-14 83.2 44 81.8
MCO03G075 Micromonas commoda HOM05D003542 ORTHO05D049253 4.5e-14 82.0 162 34.0
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 1.3e-13 80.5 51 72.5
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 1.3e-13 80.5 160 34.4
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 8.8e-10 67.8 127 29.1
PRCOL_00002802 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.1e-09 67.4 141 29.8
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 8.2e-08 61.2 108 34.3
PRCOL_00004785 Prasinoderma coloniale HOM05D003542 ORTHO05D049253 1.1e-07 60.8 77 40.3
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 5.3e-07 58.5 67 35.8
arahy.Tifrunner.gnm1.ann1.97RZQE Arachis hypogaea HOM05D002940 ORTHO05D003344 1.2e-06 57.4 31 77.4
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.6e-06 57.0 140 29.3


User provided reference genes

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