Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-146 523.1 305 100.0
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.6e-145 519.6 305 99.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.8e-100 367.9 254 87.4
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 5.0e-99 365.2 256 85.5
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.2e-97 360.5 257 80.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.1e-96 357.5 257 85.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.1e-96 355.9 261 85.1
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 5.2e-96 355.1 255 84.7
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.4e-95 352.1 270 77.0
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 9.8e-95 350.9 256 85.9
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.9e-94 349.4 256 85.5
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 3.2e-93 345.9 267 77.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.1e-92 343.2 256 77.0
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.1e-92 343.2 255 78.0
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.7e-92 342.8 255 84.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 6.0e-92 341.7 255 81.6
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 6.0e-92 341.7 257 81.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.9e-91 339.0 256 80.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 3.9e-91 339.0 255 80.8
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 2.5e-90 336.3 257 80.2
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.5e-90 336.3 256 80.5
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 3.3e-90 335.9 255 82.0
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 4.3e-90 335.5 256 80.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 9.5e-90 334.3 255 75.3
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 3.6e-89 332.4 260 80.8
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.6e-89 332.4 255 80.4
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.6e-89 332.4 260 84.2
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 6.2e-89 331.6 255 83.1
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 6.2e-89 331.6 279 73.8
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.4e-88 330.5 255 76.1
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.1e-88 329.3 259 79.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.5e-87 327.0 256 73.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 4.4e-87 325.5 241 83.8
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.3e-86 323.9 255 76.9
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.7e-86 323.6 255 79.6
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.7e-86 323.6 257 67.3
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.2e-86 323.2 256 66.4
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.9e-86 322.8 258 75.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 8.4e-86 321.2 256 79.7
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.2e-85 319.3 257 65.8
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 4.1e-85 318.9 265 76.6
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 7.1e-85 318.2 258 73.6
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.2e-85 317.8 256 79.3
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.1e-84 316.6 256 74.2
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.5e-84 315.8 257 79.0
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.5e-84 315.8 262 79.4
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 7.8e-84 314.7 263 75.7
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.7e-83 313.5 257 63.4
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.7e-83 313.5 258 65.5
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.3e-83 313.2 256 80.9
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.3e-83 313.2 257 78.2
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 3.0e-83 312.8 257 77.0
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-82 310.5 259 71.0
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.9e-82 310.1 256 77.7
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.9e-82 310.1 256 64.1
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.3e-82 309.3 256 76.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 9.6e-82 307.8 256 78.1
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.6e-81 307.0 260 66.5
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.1e-81 306.6 248 65.7
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 6.9e-80 301.6 255 73.7
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 8.9e-80 301.2 262 76.7
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.6e-79 299.7 258 61.2
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.2e-78 296.6 271 59.4
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.9e-78 296.2 255 77.6
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 3.8e-78 295.8 259 65.3
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.8e-78 295.8 259 65.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.9e-78 295.4 256 66.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 6.4e-78 295.0 256 70.3
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 6.4e-78 295.0 256 63.7
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.4e-77 293.9 232 81.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 2.4e-77 293.1 257 72.8
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 2.4e-77 293.1 259 64.9
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 7.1e-77 291.6 259 64.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.6e-76 290.4 259 57.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.6e-76 290.4 259 64.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 2.1e-76 290.0 256 72.3
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.5e-76 289.3 232 64.7
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 6.0e-76 288.5 259 66.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.0e-75 287.7 262 72.1
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.1e-74 284.3 290 55.9
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-74 283.5 260 60.8
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.5e-74 283.1 260 61.2
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 3.3e-74 282.7 260 60.8
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 2.1e-73 280.0 239 78.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-72 276.6 230 76.1
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.1e-72 276.2 269 66.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 4.0e-72 275.8 255 67.1
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.2e-71 274.2 230 75.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-71 273.9 270 66.3
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.0e-71 273.5 256 61.3
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.6e-71 273.1 258 58.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.4e-71 272.7 249 60.2
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 7.6e-71 271.6 232 63.4
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.7e-70 270.4 261 61.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.9e-70 268.9 258 57.8
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.4e-69 266.5 262 67.2
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 5.4e-69 265.4 259 56.8
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.2e-68 264.2 306 52.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 3.5e-68 262.7 256 57.4
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.6e-68 262.3 268 64.9
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.0e-67 261.2 238 74.4
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.8e-67 260.4 274 63.1
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.3e-67 260.0 260 56.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.3e-67 260.0 232 75.9
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.9e-67 259.2 243 69.5
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.1e-67 258.8 237 59.5
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.1e-66 257.7 256 60.5
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.3e-66 255.8 247 70.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 7.4e-66 255.0 228 67.5
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 4.0e-64 249.2 256 53.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 9.0e-64 248.1 263 53.6
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.5e-63 247.3 255 68.6
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.0e-63 246.9 255 67.1
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 8.4e-62 241.5 233 68.2
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.1e-61 241.1 232 71.6
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 3.5e-60 236.1 260 53.1
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 3.0e-59 233.0 257 52.5
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 8.7e-59 231.5 301 56.5
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 8.7e-59 231.5 301 56.5
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-56 224.2 248 60.5
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-56 224.2 248 60.5
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.2e-53 212.6 243 65.4
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-52 210.3 244 51.6
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-52 210.3 242 52.9
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.8e-51 207.2 164 84.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.9e-51 206.1 164 80.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-49 201.1 234 52.6
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.3e-49 201.1 234 52.6
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.6e-47 193.4 215 50.7
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.7e-41 172.9 146 76.0
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.8e-40 170.6 140 92.1
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-40 169.1 149 81.9
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 5.0e-38 162.5 174 53.4
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-37 161.4 162 58.0
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.5e-37 160.2 138 59.4
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 5.5e-37 159.1 165 76.4
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.7e-34 149.1 116 65.5
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 8.2e-33 145.2 245 40.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.2e-29 133.3 79 82.3
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.2e-29 133.3 182 59.3
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.0e-27 126.7 91 71.4
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.7e-26 122.5 162 64.2
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 4.1e-24 116.3 276 45.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 8.8e-19 98.6 243 47.7
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 7.7e-15 85.5 84 54.8
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.9e-13 80.9 70 62.9
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.2e-13 79.7 101 47.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 5.2e-11 72.8 277 27.8
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 9.8e-10 68.6 44 77.3
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.2e-09 67.4 42 78.6
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.6e-06 55.5 25 96.0


User provided reference genes

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