Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.8e-175 616.7 310 100.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.8e-173 612.5 310 99.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.9e-69 266.9 319 56.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.8e-67 260.4 325 50.5
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 7.5e-66 255.0 329 49.2
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.1e-64 251.1 332 50.9
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 9.1e-64 248.1 320 49.4
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.5e-61 240.7 333 50.8
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 7.2e-61 238.4 332 47.3
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.2e-60 237.7 324 50.6
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.8e-60 236.5 331 47.4
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.6e-60 236.1 307 50.8
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.3e-57 227.6 318 46.9
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-55 220.7 315 46.0
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.6e-55 220.7 324 48.5
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.0e-55 220.3 312 47.1
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.0e-55 220.3 320 46.2
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.5e-55 219.5 327 47.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 5.9e-55 218.8 356 43.5
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-54 216.9 321 45.8
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.9e-54 216.5 300 48.0
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 6.6e-54 215.3 300 47.7
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 4.3e-53 212.6 353 44.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.6e-53 212.2 303 46.5
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 9.5e-53 211.5 329 45.9
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.2e-52 211.1 331 44.7
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 6.1e-52 208.8 324 45.1
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.0e-51 208.0 302 47.0
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 7.5e-50 201.8 335 43.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.4e-49 198.7 334 42.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.4e-49 198.7 334 41.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.4e-48 197.6 349 44.7
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.8e-48 197.2 287 47.7
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 5.4e-48 195.7 316 43.4
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 5.4e-48 195.7 322 44.7
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.2e-47 194.5 338 41.1
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.6e-47 194.1 340 45.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 2.3e-46 190.3 324 41.0
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 5.0e-46 189.1 310 44.5
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 8.6e-46 188.3 319 42.3
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 4.3e-45 186.0 347 42.7
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.6e-45 185.7 348 39.9
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 9.5e-45 184.9 271 46.5
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 9.5e-45 184.9 314 42.4
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 2.8e-44 183.3 300 44.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 3.6e-44 183.0 314 44.3
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 4.7e-44 182.6 337 40.7
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.7e-44 182.6 337 40.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.7e-44 182.6 337 40.7
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 4.7e-44 182.6 341 41.9
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.7e-44 182.6 332 41.9
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.7e-44 182.6 315 40.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.2e-44 182.2 332 41.0
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-43 181.4 320 44.1
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-43 181.0 333 43.5
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-42 176.8 208 53.4
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-42 176.8 208 53.4
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-42 176.0 208 53.4
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-42 176.0 208 53.4
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-42 175.3 208 53.4
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-42 175.3 208 53.4
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.7e-41 174.1 303 43.2
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-41 173.7 208 52.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 6.4e-41 172.2 371 38.5
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.1e-40 171.4 338 43.8
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.4e-40 170.2 191 55.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.4e-40 170.2 315 43.8
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.2e-40 169.9 347 39.2
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 3.2e-40 169.9 317 42.0
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 5.4e-40 169.1 311 44.4
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.2e-39 167.9 340 37.9
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.5e-39 166.4 348 37.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 3.5e-39 166.4 300 43.3
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 5.0e-38 162.5 328 39.0
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 5.0e-38 162.5 318 42.5
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.5e-37 161.0 292 43.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.5e-37 161.0 293 44.7
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.3e-37 158.7 312 40.4
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 9.5e-37 158.3 306 42.8
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.6e-36 157.5 289 43.3
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 3.6e-36 156.4 288 44.1
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 8.9e-35 151.8 298 40.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 7.5e-34 148.7 313 38.0
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 7.5e-34 148.7 298 39.6
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.3e-33 147.9 315 40.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.7e-33 147.5 324 36.4
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.7e-33 146.4 317 39.7
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 4.9e-33 146.0 307 38.4
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.4e-32 144.4 328 35.7
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.4e-32 143.7 184 52.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 4.1e-32 142.9 184 51.6
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 5.4e-32 142.5 416 35.3
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 9.2e-32 141.7 320 37.5
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 9.2e-32 141.7 320 37.5
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 9.2e-32 141.7 320 37.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 9.2e-32 141.7 304 39.5
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.5e-31 139.8 318 40.3
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.5e-31 139.8 158 51.9
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 3.5e-31 139.8 290 40.0
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 4.6e-31 139.4 293 39.9
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 7.8e-31 138.7 329 36.2
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 7.8e-31 138.7 307 40.1
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.3e-30 137.9 332 37.3
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 2.3e-30 137.1 284 41.9
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 3.0e-30 136.7 291 40.9
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 5.1e-30 136.0 276 39.5
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 6.6e-30 135.6 330 37.3
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 6.6e-30 135.6 184 50.5
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 6.6e-30 135.6 297 39.1
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.1e-29 134.8 311 38.6
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.6e-29 132.5 300 37.3
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.6e-28 131.0 324 36.1
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.1e-28 130.6 280 39.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.8e-28 130.2 321 35.2
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.8e-28 130.2 308 36.7
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.6e-28 129.8 314 36.9
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 6.2e-28 129.0 216 44.4
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.8e-27 127.5 273 38.5
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 4.0e-27 126.3 332 33.7
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 8.9e-27 125.2 325 35.7
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 8.9e-27 125.2 310 37.7
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.2e-26 124.8 303 37.3
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.2e-26 124.8 325 35.7
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 2.6e-26 123.6 301 33.2
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.6e-26 123.6 303 36.0
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 3.4e-26 123.2 327 34.6
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 3.4e-26 123.2 325 36.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.8e-26 122.5 306 35.6
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.3e-25 121.3 282 36.9
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 3.8e-25 119.8 327 33.3
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.1e-24 116.3 321 35.5
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 7.1e-24 115.5 247 37.7
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.2e-24 115.2 271 37.6
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.5e-23 113.2 313 31.6
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 3.5e-23 113.2 270 39.6
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 3.0e-22 110.2 177 42.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 5.1e-22 109.4 195 43.6
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 8.7e-22 108.6 314 33.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 8.7e-22 108.6 75 77.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 6.2e-20 102.4 306 33.3
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 8.1e-20 102.1 301 33.2
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 2.6e-18 97.1 298 31.9
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.8e-18 95.9 281 35.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 5.8e-18 95.9 258 37.6
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 7.6e-18 95.5 291 33.7
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 2.9e-17 93.6 414 28.5
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.8e-17 93.2 284 32.4
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.1e-16 91.7 334 30.5
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.9e-16 90.9 76 69.7
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 2.8e-12 77.0 222 33.3
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 3.6e-12 76.6 178 36.5
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.4e-11 73.9 116 43.1
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.2e-09 67.4 223 32.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.8e-09 66.6 260 30.8
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.4e-09 65.9 121 35.5
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 1.4e-08 64.7 236 32.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.9e-08 64.3 171 35.1
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.4e-08 63.9 286 29.7
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 3.2e-08 63.5 310 28.7
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 7.1e-08 62.4 153 34.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.1e-07 60.8 310 26.5
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 6.0e-07 59.3 354 26.8
HPP92_025086 Vanilla planifolia HOM05D004499 ORTHO05D004928 3.0e-06 57.0 343 27.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.7e-06 55.8 275 25.8


User provided reference genes

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