Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 0.0e+00 1400.6 730 100.0
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 0.0e+00 1194.9 731 88.5
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.2e-168 595.9 762 51.0
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.1e-167 593.6 762 51.4
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.1e-157 561.2 753 50.5
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 4.8e-156 555.8 771 47.6
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.9e-152 543.9 751 49.9
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 2.8e-140 503.4 782 46.3
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 2.2e-132 477.2 814 42.1
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.9e-108 397.1 819 37.6
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 9.2e-107 392.1 763 40.0
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.0e-105 388.7 743 41.3
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.8e-102 377.9 780 38.2
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.4e-101 373.6 765 38.4
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 3.8e-100 370.2 778 38.3
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 4.7e-95 353.2 680 40.4
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 6.9e-94 349.4 766 37.7
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 9.9e-93 345.5 640 41.4
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.7e-92 344.7 637 40.7
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.4e-91 341.7 656 39.9
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.6e-90 338.2 773 37.0
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.6e-90 336.7 637 40.5
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 6.6e-89 332.8 837 36.7
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 9.6e-88 328.9 785 37.3
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.3e-87 328.6 771 35.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.6e-87 327.0 759 37.7
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 8.1e-87 325.9 855 33.7
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.4e-86 325.1 800 36.0
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 4.0e-86 323.6 558 44.3
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 6.9e-86 322.8 789 37.1
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 3.4e-85 320.5 785 36.8
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.8e-85 319.7 865 34.7
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 2.9e-84 317.4 785 36.7
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.9e-84 317.4 790 36.2
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.9e-84 317.4 778 35.9
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 8.4e-84 315.8 820 36.7
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.6e-82 310.1 716 37.3
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 7.9e-82 309.3 646 40.2
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.4e-77 293.9 741 35.6
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 3.4e-77 293.9 772 35.1
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.0e-76 292.4 791 33.8
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.3e-76 292.0 769 34.9
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 1.6e-74 285.0 773 34.4
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 3.0e-73 280.8 771 34.1
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 6.7e-73 279.6 774 33.6
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 6.7e-73 279.6 747 35.5
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 8.7e-73 279.3 753 34.9
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.5e-72 278.5 765 35.4
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.3e-72 277.3 755 34.6
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.1e-71 274.6 750 34.8
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.1e-70 272.3 740 34.7
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.4e-70 271.9 782 33.2
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.0e-69 268.1 750 35.5
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 2.2e-68 264.6 763 33.2
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.5e-68 263.1 787 33.5
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.5e-67 261.2 734 33.2
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 3.2e-67 260.8 314 54.8
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 3.0e-65 254.2 743 31.6
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.0e-65 254.2 764 33.6
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 6.7e-65 253.1 772 32.1
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.5e-64 251.9 774 32.7
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.7e-64 250.0 693 34.1
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 2.2e-63 248.1 737 32.6
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 3.7e-63 247.3 655 35.1
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.4e-62 245.4 738 33.3
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.5e-61 241.9 751 32.0
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 2.0e-61 241.5 766 32.4
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.3e-60 238.8 714 33.9
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.7e-60 238.4 697 33.7
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 6.5e-60 236.5 664 34.8
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 6.5e-60 236.5 747 34.3
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 9.4e-59 232.6 749 32.2
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 9.4e-59 232.6 771 31.0
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 1.4e-57 228.8 739 32.7
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 3.9e-57 227.3 741 31.6
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.5e-56 225.3 765 31.2
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.1e-54 219.2 704 31.5
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.2e-53 215.7 677 33.7
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.0e-53 214.9 731 30.9
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 3.4e-53 214.2 696 30.6
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.3e-52 212.2 735 31.4
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.7e-52 211.8 764 29.1
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 7.2e-51 206.5 657 31.2
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 2.1e-50 204.9 413 39.7
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.7e-47 195.3 677 33.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 8.5e-44 183.0 738 28.2
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 4.2e-43 180.6 589 32.4
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.7e-42 177.9 571 32.0
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.0e-41 176.0 324 40.7
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 2.3e-41 174.9 616 31.8
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.7e-39 168.7 740 26.1
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 6.3e-39 166.8 710 28.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.5e-37 161.0 310 41.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 3.5e-37 161.0 735 27.8
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 3.8e-36 157.5 746 27.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.1e-35 156.0 788 26.3
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.5e-35 155.6 640 28.3
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 9.4e-35 152.9 726 24.9
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 6.1e-34 150.2 696 26.9
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 3.4e-32 144.4 629 28.1
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 5.7e-32 143.7 414 35.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 6.3e-31 140.2 728 25.8
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 5.3e-30 137.1 733 25.6
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.0e-29 135.2 754 25.3
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.0e-29 135.2 754 25.3
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.7e-28 132.1 647 28.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 5.0e-28 130.6 613 28.2
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 8.5e-28 129.8 623 25.7
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.1e-27 129.4 623 25.7
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-27 129.4 641 26.7
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 5.5e-27 127.1 650 26.8
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 1.2e-26 125.9 742 25.3
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.1e-26 125.2 682 27.0
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.7e-26 124.8 548 27.7
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 6.8e-25 120.2 652 26.7
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 6.8e-25 120.2 310 37.4
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 8.8e-25 119.8 336 32.7
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 8.8e-25 119.8 742 24.7
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 9.8e-24 116.3 214 39.3
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.3e-23 115.9 657 26.3
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 4.9e-23 114.0 189 43.9
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 3.8e-20 104.4 263 36.5
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 8.6e-20 103.2 263 36.1
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 8.6e-20 103.2 361 30.2
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 9.5e-19 99.8 364 30.2
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.7e-15 89.0 146 41.1
Actinidia31091 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.5e-13 81.3 138 42.0
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 4.4e-08 64.3 319 27.3


User provided reference genes

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