Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037328 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 1.6e-85 319.3 155 100.0
CSS0031527 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 3.6e-85 318.2 155 99.4
Rhsim05G0044600 Rhododendron simsii HOM05D003891 ORTHO05D004802 1.7e-79 299.3 155 90.3
Actinidia26326 Actinidia chinensis HOM05D003891 ORTHO05D004802 2.3e-79 298.9 155 91.6
vmacro10882 Vaccinium macrocarpon HOM05D003891 ORTHO05D004802 5.6e-78 294.3 155 91.0
Dinv14180 Davidia involucrata HOM05D003891 ORTHO05D004802 1.0e-76 290.0 155 89.0
Solyc10g074590.2 Solanum lycopersicum HOM05D003891 ORTHO05D004802 2.6e-75 285.4 155 87.1
Nitab4.5_0001700g0070 Nicotiana tabacum HOM05D003891 ORTHO05D004802 3.4e-75 285.0 155 86.5
Sopen10g027080 Solanum pennellii HOM05D003891 ORTHO05D004802 3.4e-75 285.0 155 86.5
CANSAT25G0951 Cannabis sativa HOM05D003891 ORTHO05D004802 1.3e-74 283.1 155 85.8
CiPaw.06G114500 Carya illinoinensis HOM05D003891 ORTHO05D004802 3.7e-74 281.6 155 86.5
Sc08g0002090 Simmondsia chinensis HOM05D003891 ORTHO05D004802 1.4e-73 279.6 155 85.8
QL11p056607 Quercus lobata HOM05D003891 ORTHO05D004802 1.9e-73 279.3 155 86.5
TAR628G0887 Trochodendron aralioides HOM05D003891 ORTHO05D004802 1.9e-73 279.3 155 85.8
Cfa005391 Carpinus fangiana HOM05D003891 ORTHO05D004802 2.4e-73 278.9 155 84.5
CAN.G234.2 Capsicum annuum HOM05D003891 ORTHO05D004802 3.2e-73 278.5 155 85.2
Manes.15G113400 Manihot esculenta HOM05D003891 ORTHO05D004802 4.1e-73 278.1 155 85.2
Hma1.2p1_0271F.1_g108710 Hydrangea macrophylla HOM05D003891 ORTHO05D004802 7.0e-73 277.3 155 85.8
GSVIVG01023862001 Vitis vinifera HOM05D003891 ORTHO05D004802 1.2e-72 276.6 155 83.9
ECA233G4850 Erigeron canadensis HOM05D003891 ORTHO05D004802 1.6e-72 276.2 155 84.5
Haze_01964 Corylus avellana HOM05D003891 ORTHO05D004802 3.5e-72 275.0 155 83.9
RcHm_v2.0_Chr6g0281141 Rosa chinensis HOM05D003891 ORTHO05D004802 3.5e-72 275.0 155 84.5
MD05G1141200 Malus domestica HOM05D003891 ORTHO05D004802 4.6e-72 274.6 155 84.5
Potri.009G169000 Populus trichocarpa HOM05D003891 ORTHO05D004802 4.6e-72 274.6 155 84.5
Eucgr.H04996 Eucalyptus grandis HOM05D003891 ORTHO05D004802 6.0e-72 274.2 155 85.8
Ciclev10028695m.g Citrus clementina HOM05D003891 ORTHO05D004802 1.0e-71 273.5 155 81.9
Cc09_g10890 Coffea canephora HOM05D003891 ORTHO05D004802 1.0e-71 273.5 155 83.2
Cpa.g.sc232.5 Carica papaya HOM05D003891 ORTHO05D004802 1.3e-71 273.1 155 83.9
TWI75G0797 Tripterygium wilfordii HOM05D003891 ORTHO05D004802 1.7e-71 272.7 155 83.9
Lsat_1_v5_gn_8_120640 Lactuca sativa HOM05D003891 ORTHO05D004802 2.3e-71 272.3 155 83.2
HanXRQChr16g0515191 Helianthus annuus HOM05D003891 ORTHO05D004802 3.0e-71 271.9 155 85.2
MD10G1142600 Malus domestica HOM05D003891 ORTHO05D004802 3.0e-71 271.9 155 83.2
Aqoxy6G01549 Aquilegia oxysepala HOM05D003891 ORTHO05D004802 5.0e-71 271.2 155 81.9
Atru.chr5.3571 Acer truncatum HOM05D003891 ORTHO05D004802 6.6e-71 270.8 157 84.7
Glyma.09G154000 Glycine max HOM05D003891 ORTHO05D004802 6.6e-71 270.8 155 81.9
VMungo0464G1760 Vigna mungo HOM05D003891 ORTHO05D004802 6.6e-71 270.8 155 81.3
Gohir.A13G064300 Gossypium hirsutum HOM05D003891 ORTHO05D004802 1.5e-70 269.6 155 83.2
PGR042G1041 Punica granatum HOM05D003891 ORTHO05D004802 1.5e-70 269.6 155 81.9
Phvul.004G127600 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 1.9e-70 269.2 155 81.3
TPR.G10657 Trifolium pratense HOM05D003891 ORTHO05D004802 1.9e-70 269.2 155 81.3
Gohir.D13G057500 Gossypium hirsutum HOM05D003891 ORTHO05D004802 2.5e-70 268.9 155 82.6
Duzib052G0081 Durio zibethinus HOM05D003891 ORTHO05D004802 4.3e-70 268.1 155 82.6
Thhalv10025517m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 4.3e-70 268.1 155 82.6
FAN27G1799 Fragaria x ananassa HOM05D003891 ORTHO05D004802 4.3e-70 268.1 155 83.2
Thecc.02G147300 Theobroma cacao HOM05D003891 ORTHO05D004802 4.3e-70 268.1 155 83.2
Dinv41863 Davidia involucrata HOM05D003891 ORTHO05D004802 5.6e-70 267.7 155 83.9
FvH4_2g16941 Fragaria vesca HOM05D003891 ORTHO05D004802 5.6e-70 267.7 155 81.9
arahy.Tifrunner.gnm1.ann1.BD83WD Arachis hypogaea HOM05D003891 ORTHO05D004802 1.2e-69 266.5 155 81.3
arahy.Tifrunner.gnm1.ann1.HVI0X6 Arachis hypogaea HOM05D003891 ORTHO05D004802 1.2e-69 266.5 155 81.3
FAN24G0882 Fragaria x ananassa HOM05D003891 ORTHO05D004802 1.2e-69 266.5 155 81.3
Migut.B00004 Erythranthe guttata HOM05D003891 ORTHO05D004802 3.6e-69 265.0 155 83.2
Gorai.013G064800 Gossypium raimondii HOM05D003891 ORTHO05D004802 3.6e-69 265.0 155 81.9
Aa31LG2G14970 Aethionema arabicum HOM05D003891 ORTHO05D004802 6.2e-69 264.2 155 80.0
Sp7g33150 Schrenkiella parvula HOM05D003891 ORTHO05D004802 6.2e-69 264.2 155 81.9
AL7G15800 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 8.0e-69 263.8 155 80.6
CiPaw.05G094100 Carya illinoinensis HOM05D003891 ORTHO05D004802 8.0e-69 263.8 155 81.9
ATR0605G040 Amborella trichopoda HOM05D003891 ORTHO05D004802 1.1e-68 263.5 155 79.4
AT4G35360 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 1.4e-68 263.1 155 80.6
Medtr6g060550 Medicago truncatula HOM05D003891 ORTHO05D004802 1.4e-68 263.1 155 80.0
Ca_25233_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 1.8e-68 262.7 155 80.6
Carub.0007s0494 Capsella rubella HOM05D003891 ORTHO05D004802 2.3e-68 262.3 155 80.6
Lj5C171T9 Lonicera japonica HOM05D003891 ORTHO05D004802 2.3e-68 262.3 155 82.6
Prupe.8G181200 Prunus persica HOM05D003891 ORTHO05D004802 2.3e-68 262.3 155 81.9
Sabra04G0139800 Salix brachista HOM05D003891 ORTHO05D004802 2.3e-68 262.3 155 80.6
Lalb_Chr03g0033131 Lupinus albus HOM05D003891 ORTHO05D004802 3.1e-68 261.9 155 80.0
Nn6g31645 Nelumbo nucifera HOM05D003891 ORTHO05D004802 5.2e-68 261.2 155 80.6
BcaNung00603 Brassica carinata HOM05D003891 ORTHO05D004802 6.8e-68 260.8 155 80.0
MELO3C015700.2 Cucumis melo HOM05D003891 ORTHO05D004802 6.8e-68 260.8 155 78.1
Psat1g106000 Pisum sativum HOM05D003891 ORTHO05D004802 6.8e-68 260.8 155 79.4
C01p03550 Brassica napus HOM05D003891 ORTHO05D004802 8.9e-68 260.4 155 80.0
BolC1t00344H Brassica oleracea HOM05D003891 ORTHO05D004802 8.9e-68 260.4 155 80.0
Duzib132G1166 Durio zibethinus HOM05D003891 ORTHO05D004802 8.9e-68 260.4 155 79.4
MBI01_g17246_MAGBIO Magnolia biondii HOM05D003891 ORTHO05D004802 8.9e-68 260.4 155 79.4
PSO761G0136 Papaver somniferum HOM05D003891 ORTHO05D004802 1.2e-67 260.0 155 78.7
A01p03200 Brassica napus HOM05D003891 ORTHO05D004802 1.5e-67 259.6 155 79.4
BraA01t00305Z Brassica rapa HOM05D003891 ORTHO05D004802 1.5e-67 259.6 155 79.4
HPP92_015472 Vanilla planifolia HOM05D003891 ORTHO05D004802 1.5e-67 259.6 155 78.1
Hund00096 Selenicereus undatus HOM05D003891 ORTHO05D004802 2.0e-67 259.2 155 80.6
Lalb_Chr19g0131341 Lupinus albus HOM05D003891 ORTHO05D004802 2.6e-67 258.8 155 80.0
AUR62013187 Chenopodium quinoa HOM05D003891 ORTHO05D004802 3.4e-67 258.5 155 78.7
THA.LOC104807410 Tarenaya hassleriana HOM05D003891 ORTHO05D004802 3.4e-67 258.5 155 79.4
Ah.01g017670 Amaranthus hybridus HOM05D003891 ORTHO05D004802 4.4e-67 258.1 155 79.4
CsaV3_7G002080 Cucumis sativus L. HOM05D003891 ORTHO05D004802 4.4e-67 258.1 155 77.4
Lj2g0023729 Lotus japonicus HOM05D003891 ORTHO05D004802 4.4e-67 258.1 155 78.1
AUR62010186 Chenopodium quinoa HOM05D003891 ORTHO05D004802 5.8e-67 257.7 155 78.1
Nitab4.5_0005657g0030 Nicotiana tabacum HOM05D003891 ORTHO05D004802 7.5e-67 257.3 181 71.8
PSO210G7370 Papaver somniferum HOM05D003891 ORTHO05D004802 7.5e-67 257.3 155 77.4
SGA_v2.0_scaffold32G13353 Striga asiatica HOM05D003891 ORTHO05D004802 9.8e-67 256.9 155 79.4
PGSC0003DMG400014681 Solanum tuberosum HOM05D003891 ORTHO05D004802 2.2e-66 255.8 155 80.0
CARHR243690 Cardamine hirsuta HOM05D003891 ORTHO05D004802 6.4e-66 254.2 155 78.1
CDE10G0412 Ceratophyllum demersum HOM05D003891 ORTHO05D004802 8.3e-66 253.8 155 74.8
Potri.004G207700 Populus trichocarpa HOM05D003891 ORTHO05D004802 8.3e-66 253.8 155 79.4
PGSC0003DMG400016830 Solanum tuberosum HOM05D003891 ORTHO05D004802 8.3e-66 253.8 222 60.8
unitig_21.g20520 Utricularia gibba HOM05D003891 ORTHO05D004802 1.1e-65 253.4 155 78.7
MSTRG.19945 Avicennia marina HOM05D003891 ORTHO05D004802 3.2e-65 251.9 155 76.8
Sed0019069 Sechium edule HOM05D003891 ORTHO05D004802 4.1e-65 251.5 155 76.1
SalBow1G5213 Salvia bowleyana HOM05D003891 ORTHO05D004802 5.4e-65 251.1 155 77.4
Carub.0003s3137 Capsella rubella HOM05D003891 ORTHO05D004802 6.0e-64 247.7 155 76.1
Zm00001eb381870 Zea mays HOM05D003891 ORTHO05D004802 7.8e-64 247.3 155 72.9
AT2G17340 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 5.1e-63 244.6 155 75.5
Sed0009963 Sechium edule HOM05D003891 ORTHO05D004802 5.1e-63 244.6 155 73.5
Os06g0325500 Oryza sativa ssp. japonica HOM05D003891 ORTHO05D004802 5.6e-62 241.1 155 72.9
ClCG02G003290 Citrullus lanatus HOM05D003891 ORTHO05D004802 4.7e-61 238.0 200 61.0
Peaxi162Scf00362g00144 Petunia axillaris HOM05D003891 ORTHO05D004802 4.7e-61 238.0 155 76.1
Sp3g30660 Schrenkiella parvula HOM05D003891 ORTHO05D004802 1.8e-60 236.1 150 75.3
Peaxi162Scf00374g00733 Petunia axillaris HOM05D003891 ORTHO05D004802 3.1e-60 235.3 155 75.5
Thhalv10022748m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 2.0e-59 232.6 149 73.8
AL3G50220 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 7.5e-59 230.7 191 61.8
CAN.G1645.6 Capsicum annuum HOM05D003891 ORTHO05D004802 9.9e-59 230.3 155 71.6
Aa31LG8G14670 Aethionema arabicum HOM05D003891 ORTHO05D004802 1.3e-58 229.9 155 71.6
C03p58170 Brassica napus HOM05D003891 ORTHO05D004802 4.9e-58 228.0 150 72.0
BolC3t18087H Brassica oleracea HOM05D003891 ORTHO05D004802 4.9e-58 228.0 150 72.0
Carub.0003s3136 Capsella rubella HOM05D003891 ORTHO05D004802 8.3e-58 227.3 155 69.7
ATR0605G170 Amborella trichopoda HOM05D003891 ORTHO05D004802 1.4e-57 226.5 154 70.1
Carub.0003s3134 Capsella rubella HOM05D003891 ORTHO05D004802 3.2e-57 225.3 149 71.8
AL3G50210 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 5.4e-57 224.6 149 71.8
BraA06t26341Z Brassica rapa HOM05D003891 ORTHO05D004802 2.1e-56 222.6 150 71.3
A06p34080 Brassica napus HOM05D003891 ORTHO05D004802 3.5e-56 221.9 150 70.7
BcaC01g02934 Brassica carinata HOM05D003891 ORTHO05D004802 4.6e-56 221.5 151 70.9
AT2G17320 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 7.8e-56 220.7 149 69.8
BcaB08g34723 Brassica carinata HOM05D003891 ORTHO05D004802 1.7e-55 219.5 150 69.3
Lj5g0000118 Lotus japonicus HOM05D003891 ORTHO05D004802 1.1e-54 216.9 153 70.6
TPR.G16614 Trifolium pratense HOM05D003891 ORTHO05D004802 1.5e-54 216.5 154 68.2
Lalb_Chr21g0311861 Lupinus albus HOM05D003891 ORTHO05D004802 3.6e-53 211.8 153 69.9
Lalb_Chr21g0311871 Lupinus albus HOM05D003891 ORTHO05D004802 3.6e-53 211.8 155 68.4
Medtr1g076730 Medicago truncatula HOM05D003891 ORTHO05D004802 4.7e-53 211.5 154 66.2
SMO352G0076 Selaginella moellendorffii HOM05D003891 ORTHO05D004802 4.0e-52 208.4 155 63.9
Ca_09894_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 6.8e-52 207.6 154 64.9
COL.COLO4_37644 Corchorus olitorius HOM05D003891 ORTHO05D004802 6.8e-52 207.6 155 69.7
Glyma.20G212500 Glycine max HOM05D003891 ORTHO05D004802 2.9e-50 202.2 153 64.1
MD04G1014700 Malus domestica HOM05D003891 ORTHO05D004802 3.8e-50 201.8 124 75.8
Oeu009503.1 Olea europaea HOM05D003891 ORTHO05D004802 3.8e-50 201.8 160 68.1
Pp3c16_25870 Physcomitrium patens HOM05D003891 ORTHO05D004802 3.8e-50 201.8 155 62.6
arahy.Tifrunner.gnm1.ann1.QM8NH2 Arachis hypogaea HOM05D003891 ORTHO05D004802 4.9e-50 201.4 153 66.0
Medtr1g076720 Medicago truncatula HOM05D003891 ORTHO05D004802 1.4e-49 199.9 154 64.3
Psat6g112760 Pisum sativum HOM05D003891 ORTHO05D004802 3.2e-49 198.7 157 63.1
VMungo0720G0968 Vigna mungo HOM05D003891 ORTHO05D004802 2.1e-48 196.1 155 63.2
Phvul.007G111800 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 6.0e-48 194.5 155 61.9
EL10Ac9g21550 Beta vulgaris HOM05D003891 ORTHO05D004802 3.9e-47 191.8 155 62.6
MD16G1142900 Malus domestica HOM05D003891 ORTHO05D004802 2.5e-46 189.1 163 60.1
Mapoly0021s0096 Marchantia polymorpha HOM05D003891 ORTHO05D004802 5.8e-43 177.9 155 56.8
Lj9A408G77 Lonicera japonica HOM05D003891 ORTHO05D004802 1.2e-40 170.2 98 85.7
AagrBONN_evm.TU.Sc2ySwM_368.2236 Anthoceros agrestis HOM05D003891 ORTHO05D004802 1.3e-39 166.8 155 52.9
Nitab4.5_0022130g0010 Nicotiana tabacum HOM05D003891 ORTHO05D004802 1.9e-38 162.9 134 60.4
arahy.Tifrunner.gnm1.ann1.94LQT9 Arachis hypogaea HOM05D003891 ORTHO05D004802 1.1e-36 157.1 153 54.2
Psat3g195440 Pisum sativum HOM05D003891 ORTHO05D004802 1.4e-36 156.8 99 76.8
CBR_g36866 Chara braunii HOM05D003891 ORTHO05D004802 6.9e-36 154.5 157 50.3
Ca_09895_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 2.2e-34 149.4 155 54.8
Glyma.20G212400 Glycine max HOM05D003891 ORTHO05D004802 2.4e-33 146.0 120 62.5
CARHR107450 Cardamine hirsuta HOM05D003891 ORTHO05D004802 7.1e-33 144.4 99 71.7
MD16G1233000 Malus domestica HOM05D003891 ORTHO05D004802 8.1e-29 131.0 76 80.3
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 5.3e-20 101.7 99 58.6
MCO09G078 Micromonas commoda HOM05D003891 ORTHO05D004802 8.4e-18 94.4 157 36.9
SHI05806 Sapria himalayana HOM05D003891 ORTHO05D004802 3.2e-17 92.4 45 88.9
CARHR107460 Cardamine hirsuta HOM05D003891 ORTHO05D004802 5.1e-15 85.1 53 69.8
EL10Ac4g09108 Beta vulgaris HOM05D003891 ORTHO05D004802 1.9e-14 83.2 64 64.1
MD10G1088800 Malus domestica HOM05D003891 ORTHO05D004802 4.8e-13 78.6 45 73.3
Cre13.g572500 Chlamydomonas reinhardtii HOM05D003891 ORTHO05D004802 1.0e-10 70.9 126 33.3
EL10Ac5g11707 Beta vulgaris HOM05D003891 ORTHO05D004802 2.5e-09 66.2 43 72.1
Solyc01g112270.1 Solanum lycopersicum HOM05D003891 ORTHO05D004802 5.7e-06 55.1 31 87.1
Sopen01g054380 Solanum pennellii HOM05D003891 ORTHO05D031685 7.4e-06 54.7 31 87.1


User provided reference genes

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