Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037270 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.2e-87 325.1 169 100.0
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 2.1e-78 295.8 164 94.5
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 2.1e-78 295.8 164 94.5
CSS0031848 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.3e-64 250.0 171 81.9
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 9.1e-58 227.3 165 73.9
CSS0047421 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 5.9e-57 224.6 170 75.9
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 7.7e-57 224.2 165 72.7
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 2.9e-56 222.2 167 71.9
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 1.6e-54 216.5 165 72.7
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 5.7e-52 208.0 167 64.7
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 5.7e-52 208.0 164 65.9
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 9.7e-52 207.2 164 66.5
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 1.7e-51 206.5 165 63.6
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 1.1e-50 203.8 169 66.9
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 2.7e-49 199.1 167 62.9
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 2.7e-49 199.1 164 63.4
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 5.9e-49 198.0 167 61.7
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 7.7e-49 197.6 168 63.1
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 1.0e-48 197.2 166 62.0
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.2e-48 196.1 167 61.7
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 5.0e-48 194.9 165 62.4
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 1.1e-47 193.7 164 61.6
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 1.9e-47 193.0 165 62.4
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 7.2e-47 191.0 167 61.1
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 7.2e-47 191.0 166 61.4
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 1.6e-46 189.9 165 60.0
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 2.7e-46 189.1 161 62.7
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 3.6e-46 188.7 166 58.4
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 4.7e-46 188.3 166 59.0
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 8.0e-46 187.6 164 60.4
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 1.8e-45 186.4 167 57.5
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 1.8e-45 186.4 166 59.0
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 2.3e-45 186.0 164 62.2
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 4.0e-45 185.3 160 61.2
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 3.4e-44 182.2 175 56.0
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 5.7e-44 181.4 166 57.8
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 7.5e-44 181.0 170 59.4
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 9.8e-44 180.6 167 61.1
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 1.3e-43 180.3 167 56.3
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 1.7e-43 179.9 166 59.6
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 8.3e-43 177.6 166 59.6
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 2.4e-42 176.0 166 56.6
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 5.4e-42 174.9 141 69.5
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 7.0e-42 174.5 167 55.7
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.2e-41 173.7 167 56.3
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 1.6e-41 173.3 165 58.2
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 3.5e-41 172.2 165 59.4
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 3.5e-41 172.2 165 53.9
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 1.0e-40 170.6 170 58.8
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 1.3e-40 170.2 170 58.2
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 2.3e-40 169.5 170 55.3
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 5.0e-40 168.3 161 58.4
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 5.0e-40 168.3 165 55.8
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 8.6e-40 167.5 168 53.6
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 1.1e-39 167.2 167 54.5
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.5e-39 166.8 174 55.2
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 4.2e-39 165.2 167 53.3
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 7.2e-39 164.5 169 52.7
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 7.2e-39 164.5 167 53.9
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 1.2e-38 163.7 166 52.4
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 2.8e-38 162.5 166 57.8
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 3.6e-38 162.2 168 51.2
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 6.1e-38 161.4 168 51.2
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 6.1e-38 161.4 187 48.7
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 1.0e-37 160.6 166 54.8
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 1.0e-37 160.6 165 55.8
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.4e-37 160.2 169 52.7
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 1.4e-37 160.2 169 52.7
arahy.Tifrunner.gnm1.ann1.98W4LT Arachis hypogaea HOM05D003405 ORTHO05D003920 1.8e-37 159.8 165 57.6
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.8e-37 159.8 166 54.2
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 8.9e-37 157.5 163 52.8
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 8.9e-37 157.5 170 52.4
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-36 156.4 188 50.0
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-36 156.4 188 50.0
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 2.0e-36 156.4 230 45.2
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 3.4e-36 155.6 202 47.0
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 4.4e-36 155.2 164 54.9
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 4.4e-36 155.2 164 54.9
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 7.5e-36 154.5 170 53.5
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 7.5e-36 154.5 154 53.2
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 9.8e-36 154.1 167 51.5
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 1.3e-35 153.7 168 50.6
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 1.3e-35 153.7 168 50.6
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 1.3e-35 153.7 170 52.9
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 1.7e-35 153.3 168 51.2
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 2.2e-35 152.9 171 50.3
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 2.2e-35 152.9 162 51.2
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 3.7e-35 152.1 165 53.3
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 8.3e-35 151.0 169 50.9
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 8.3e-35 151.0 179 48.6
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-34 150.6 166 54.8
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 1.1e-34 150.6 165 53.3
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 1.4e-34 150.2 170 50.0
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 4.1e-34 148.7 159 52.8
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 5.4e-34 148.3 173 49.7
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 5.4e-34 148.3 166 51.2
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 7.0e-34 147.9 166 50.6
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 2.0e-33 146.4 165 50.3
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 1.0e-32 144.1 168 49.4
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.3e-32 143.7 162 51.2
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 3.9e-32 142.1 171 48.0
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 5.0e-32 141.7 166 51.8
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 2.5e-31 139.4 166 49.4
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 7.3e-31 137.9 173 45.1
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 1.2e-30 137.1 108 63.9
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 4.7e-30 135.2 174 47.1
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 2.3e-29 132.9 174 46.0
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-28 130.2 128 60.2
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 7.5e-28 127.9 172 45.3
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 7.5e-28 127.9 172 45.3
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 9.8e-28 127.5 210 41.9
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 1.3e-27 127.1 174 44.3
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 1.7e-27 126.7 131 57.3
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 2.9e-27 125.9 180 44.4
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 4.9e-27 125.2 134 50.7
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 6.4e-27 124.8 165 47.3
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 8.3e-27 124.4 110 60.0
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 8.3e-27 124.4 174 43.7
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.4e-26 123.6 134 50.0
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.4e-26 123.6 160 44.4
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 5.4e-26 121.7 114 58.8
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 7.0e-26 121.3 176 46.0
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 9.2e-26 120.9 139 56.1
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 1.6e-25 120.2 175 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 2.0e-25 119.8 172 41.3
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 2.7e-25 119.4 172 43.0
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 2.7e-25 119.4 172 44.2
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 3.5e-25 119.0 120 52.5
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 4.6e-25 118.6 150 48.0
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 4.6e-25 118.6 172 43.0
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 1.7e-24 116.7 132 52.3
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.0e-24 115.9 127 53.5
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 3.9e-24 115.5 172 44.8
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 3.9e-24 115.5 109 58.7
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 3.3e-23 112.5 110 57.3
Psat2g004000 Pisum sativum HOM05D003405 ORTHO05D003920 1.2e-22 110.5 133 51.9
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 2.8e-22 109.4 164 39.0
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.1e-21 107.5 178 39.9
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 4.0e-21 105.5 165 39.4
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 4.0e-21 105.5 161 39.8
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 5.2e-21 105.1 167 36.5
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 1.7e-19 100.1 169 36.1
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 3.7e-19 99.0 171 34.5
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 3.7e-19 99.0 202 30.7
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 3.7e-19 99.0 202 30.7
Carub.0003s3263 Capsella rubella HOM05D003405 ORTHO05D003920 3.7e-19 99.0 112 48.2
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 4.9e-19 98.6 59 78.0
Atru.chr1.1032 Acer truncatum HOM05D003405 ORTHO05D003920 8.3e-19 97.8 123 50.4
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 2.4e-18 96.3 68 61.8
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 5.4e-18 95.1 52 86.5
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 5.4e-18 95.1 160 38.1
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 5.4e-18 95.1 160 38.1
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 4.6e-17 92.0 155 39.4
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 2.3e-16 89.7 142 42.3
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.9e-15 86.7 128 40.6
FAN28G2580 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.2e-14 84.0 108 47.2
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.1e-14 83.2 108 45.4
arahy.Tifrunner.gnm1.ann1.555Q75 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-12 77.0 105 45.7
Cre01.g035000 Chlamydomonas reinhardtii HOM05D003405 ORTHO05D003920 3.2e-10 69.3 183 30.6
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 4.6e-09 65.5 80 47.5
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 6.6e-08 61.6 83 42.2
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 1.1e-07 60.8 78 41.0
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 1.1e-07 60.8 78 41.0
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 1.5e-07 60.5 100 36.0
MCO01G177 Micromonas commoda HOM05D003405 ORTHO05D003920 2.5e-07 59.7 185 30.3
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 4.3e-07 58.9 202 27.2
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 1.2e-06 57.4 106 38.7
HPP92_003102 Vanilla planifolia HOM05D003405 ORTHO05D003920 2.8e-06 56.2 127 35.4
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 8.1e-06 54.7 64 45.3


User provided reference genes

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