Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-79 299.3 131 100.0
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-41 172.9 122 69.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.1e-37 158.7 122 62.3
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.3e-37 157.9 122 63.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.3e-37 157.9 122 63.1
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-36 156.8 122 62.3
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.4e-36 155.2 122 61.5
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 9.9e-36 153.7 122 59.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.2e-35 152.5 122 61.5
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.9e-35 152.1 122 60.7
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 4.9e-35 151.4 122 60.7
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 4.9e-35 151.4 122 60.7
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.4e-35 150.6 122 59.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 8.4e-35 150.6 122 61.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.1e-34 150.2 122 59.8
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.9e-34 149.4 122 61.5
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.4e-34 149.1 122 60.7
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 3.2e-34 148.7 122 59.0
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 4.2e-34 148.3 122 59.8
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.2e-34 148.3 122 59.0
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.4e-34 147.9 120 60.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.4e-34 147.9 122 59.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.4e-34 147.9 122 58.2
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.4e-34 147.9 122 59.0
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.1e-34 147.5 122 59.0
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.1e-34 147.5 122 59.0
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 7.1e-34 147.5 122 59.0
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 9.3e-34 147.1 122 58.2
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 9.3e-34 147.1 122 58.2
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.2e-33 146.7 119 58.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.2e-33 146.7 122 59.0
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.2e-33 146.7 122 59.0
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.1e-33 146.0 122 59.0
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.1e-33 146.0 122 59.0
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.7e-33 145.6 122 59.0
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.7e-33 145.6 122 58.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.7e-33 145.6 122 59.8
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 2.7e-33 145.6 122 58.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 2.7e-33 145.6 122 58.2
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.5e-33 145.2 122 58.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.5e-33 145.2 122 59.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 4.6e-33 144.8 122 58.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.6e-33 144.8 122 58.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 6.0e-33 144.4 122 59.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 6.0e-33 144.4 122 59.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 6.0e-33 144.4 122 58.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 6.0e-33 144.4 122 58.2
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 7.9e-33 144.1 122 58.2
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 7.9e-33 144.1 122 57.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 7.9e-33 144.1 122 58.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 7.9e-33 144.1 122 58.2
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 7.9e-33 144.1 122 58.2
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.0e-32 143.7 122 57.4
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.0e-32 143.7 122 57.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.0e-32 143.7 122 57.4
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.0e-32 143.7 122 58.2
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.3e-32 143.3 122 58.2
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.3e-32 143.3 121 57.9
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.3e-32 143.3 122 57.4
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.7e-32 142.9 122 58.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.7e-32 142.9 122 58.2
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.7e-32 142.9 122 57.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.7e-32 142.9 122 58.2
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.3e-32 142.5 122 56.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 3.0e-32 142.1 122 56.6
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-32 142.1 122 57.4
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.9e-32 141.7 121 58.7
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 3.9e-32 141.7 122 59.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 3.9e-32 141.7 122 57.4
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.9e-32 141.7 121 57.9
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.1e-32 141.4 120 58.3
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 5.1e-32 141.4 115 59.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.1e-32 141.4 122 56.6
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.6e-32 141.0 122 57.4
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 6.6e-32 141.0 121 57.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 6.6e-32 141.0 122 57.4
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.6e-32 141.0 122 57.4
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 8.7e-32 140.6 121 57.0
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 8.7e-32 140.6 115 59.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 8.7e-32 140.6 121 57.9
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 8.7e-32 140.6 115 58.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.1e-31 140.2 122 56.6
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.1e-31 140.2 115 57.4
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.5e-31 139.8 121 57.0
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.5e-31 139.8 121 57.0
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.9e-31 139.4 122 56.6
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.9e-31 139.4 122 55.7
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.9e-31 139.4 115 58.3
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.9e-31 139.4 122 57.4
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.9e-31 139.4 115 58.3
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 2.5e-31 139.0 121 56.2
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 2.5e-31 139.0 121 56.2
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.5e-31 139.0 121 57.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.5e-31 139.0 122 56.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.3e-31 138.7 115 58.3
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 3.3e-31 138.7 122 56.6
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.3e-31 138.7 115 58.3
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 4.3e-31 138.3 121 57.0
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 4.3e-31 138.3 122 55.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 5.6e-31 137.9 115 57.4
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.6e-31 137.9 122 57.4
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.4e-31 137.5 122 54.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 9.6e-31 137.1 121 57.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 9.6e-31 137.1 123 56.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 9.6e-31 137.1 122 56.6
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.1e-30 136.0 121 56.2
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.1e-30 136.0 122 54.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.1e-30 136.0 121 57.0
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 2.1e-30 136.0 121 57.0
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.1e-30 136.0 121 56.2
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.8e-30 135.6 114 57.0
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 2.8e-30 135.6 121 55.4
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.8e-30 135.6 132 53.0
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.6e-30 135.2 121 56.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 4.8e-30 134.8 122 54.9
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 6.2e-30 134.4 119 55.5
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 6.2e-30 134.4 114 57.9
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 6.2e-30 134.4 115 56.5
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 6.2e-30 134.4 115 56.5
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-29 133.3 121 55.4
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.8e-29 132.9 124 54.8
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.8e-29 132.9 115 55.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.4e-29 132.5 122 54.9
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.1e-29 132.1 122 53.3
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-29 132.1 122 54.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.0e-29 131.7 118 55.9
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.0e-28 129.4 122 51.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.3e-27 126.7 122 54.9
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.1e-25 119.4 122 45.9
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.8e-24 116.3 84 61.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.3e-24 115.9 122 46.7
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.9e-24 115.2 122 49.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.5e-23 113.2 81 64.2
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 7.4e-23 110.9 91 57.1
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.6e-22 109.8 118 47.5
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 2.8e-22 109.0 118 46.6
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 6.2e-22 107.8 115 45.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.8e-21 106.3 117 42.7
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 6.9e-21 104.4 76 59.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.5e-20 103.2 73 61.6
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 7.6e-20 100.9 73 60.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.0e-19 100.5 122 41.0
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.7e-19 99.8 131 42.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.9e-18 96.3 73 57.5
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 5.5e-18 94.7 58 69.0
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 4.6e-17 91.7 115 37.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 6.0e-17 91.3 86 53.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.3e-13 78.2 117 41.0
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.4e-12 75.5 117 38.5


User provided reference genes

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