Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.9e-33 144.4 64 100.0
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.3e-16 87.8 62 64.5
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.8e-15 84.7 37 97.3
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 5.2e-14 80.5 54 70.4
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 5.2e-14 80.5 54 70.4
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 5.8e-13 77.0 54 66.7
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 9.8e-13 76.3 54 64.8
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 1.7e-12 75.5 54 63.0
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.7e-12 75.5 62 54.8
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 2.2e-12 75.1 54 61.1
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.2e-12 75.1 54 61.1
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.2e-12 75.1 54 61.1
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 3.7e-12 74.3 56 60.7
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 3.7e-12 74.3 54 61.1
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 3.7e-12 74.3 56 58.9
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 3.7e-12 74.3 54 64.8
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 4.9e-12 73.9 54 59.3
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 4.9e-12 73.9 54 59.3
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 4.9e-12 73.9 54 61.1
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 6.4e-12 73.6 57 56.1
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 8.3e-12 73.2 54 63.0
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 1.1e-11 72.8 55 61.8
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 1.1e-11 72.8 54 61.1
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 1.1e-11 72.8 54 61.1
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 1.1e-11 72.8 54 61.1
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.1e-11 72.8 65 55.4
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 1.1e-11 72.8 54 64.8
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 1.4e-11 72.4 54 57.4
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.4e-11 72.4 54 59.3
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 1.9e-11 72.0 54 63.0
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 1.9e-11 72.0 54 61.1
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 2.4e-11 71.6 54 61.1
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 2.4e-11 71.6 54 59.3
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 2.4e-11 71.6 52 63.5
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 3.2e-11 71.2 36 80.6
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 3.2e-11 71.2 54 61.1
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 3.2e-11 71.2 57 57.9
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 3.2e-11 71.2 54 59.3
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 4.1e-11 70.9 44 68.2
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 4.1e-11 70.9 44 68.2
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 4.1e-11 70.9 55 58.2
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 4.1e-11 70.9 54 59.3
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 4.1e-11 70.9 54 61.1
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 4.1e-11 70.9 54 59.3
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 5.4e-11 70.5 54 61.1
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 5.4e-11 70.5 55 58.2
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 5.4e-11 70.5 44 65.9
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 5.4e-11 70.5 55 54.5
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 7.0e-11 70.1 55 58.2
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 7.0e-11 70.1 53 60.4
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 7.0e-11 70.1 53 60.4
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 7.0e-11 70.1 54 61.1
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 7.0e-11 70.1 52 63.5
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 7.0e-11 70.1 52 63.5
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 7.0e-11 70.1 54 57.4
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 9.2e-11 69.7 54 55.6
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 9.2e-11 69.7 36 80.6
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 9.2e-11 69.7 36 80.6
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 9.2e-11 69.7 54 55.6
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 1.2e-10 69.3 44 63.6
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 1.2e-10 69.3 44 65.9
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 1.2e-10 69.3 54 57.4
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.6e-10 68.9 55 54.5
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 1.6e-10 68.9 36 80.6
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 1.6e-10 68.9 55 56.4
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 1.6e-10 68.9 44 63.6
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 1.6e-10 68.9 40 70.0
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 1.6e-10 68.9 55 52.7
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.6e-10 68.9 54 59.3
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.6e-10 68.9 54 59.3
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.0e-10 68.6 36 80.6
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.0e-10 68.6 36 80.6
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 2.0e-10 68.6 54 59.3
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 2.0e-10 68.6 54 59.3
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 2.0e-10 68.6 36 77.8
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.0e-10 68.6 54 61.1
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.0e-10 68.6 54 61.1
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 2.0e-10 68.6 61 52.5
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 2.0e-10 68.6 31 87.1
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 2.7e-10 68.2 52 61.5
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 2.7e-10 68.2 54 55.6
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 3.5e-10 67.8 55 52.7
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 3.5e-10 67.8 31 83.9
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 3.5e-10 67.8 52 61.5
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 3.5e-10 67.8 31 87.1
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 3.5e-10 67.8 31 87.1
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 3.5e-10 67.8 31 83.9
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 4.6e-10 67.4 30 83.3
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 4.6e-10 67.4 41 70.7
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 4.6e-10 67.4 55 56.4
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 6.0e-10 67.0 62 48.4
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 7.8e-10 66.6 29 89.7
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 7.8e-10 66.6 31 77.4
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 1.0e-09 66.2 53 60.4
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 1.0e-09 66.2 55 56.4
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 1.7e-09 65.5 31 80.6
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 1.7e-09 65.5 31 80.6
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 1.7e-09 65.5 55 52.7
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 1.7e-09 65.5 53 56.6
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 2.3e-09 65.1 36 75.0
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-09 65.1 53 58.5
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 2.3e-09 65.1 54 57.4
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 3.0e-09 64.7 54 55.6
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 3.0e-09 64.7 53 56.6
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 3.9e-09 64.3 48 52.1
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 3.9e-09 64.3 46 60.9
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 5.0e-09 63.9 53 56.6
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 5.0e-09 63.9 52 57.7
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 6.6e-09 63.5 52 51.9
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 6.6e-09 63.5 59 54.2
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 6.6e-09 63.5 31 83.9
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.1e-08 62.8 53 56.6
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 1.5e-08 62.4 31 74.2
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 5.6e-08 60.5 37 67.6
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 5.6e-08 60.5 37 67.6
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 7.3e-08 60.1 31 74.2
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 7.3e-08 60.1 31 74.2
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 7.3e-08 60.1 31 74.2
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 9.5e-08 59.7 29 75.9
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 74.2
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 1.6e-07 58.9 31 71.0
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 2.1e-07 58.5 29 75.9
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 2.1e-07 58.5 31 67.7
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 2.8e-07 58.2 54 50.0
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 2.8e-07 58.2 54 50.0
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 2.8e-07 58.2 31 71.0
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 6.2e-07 57.0 46 52.2
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 6.2e-07 57.0 46 52.2
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 6.2e-07 57.0 46 52.2
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 8.1e-07 56.6 31 71.0
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 1.1e-06 56.2 53 50.9
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 1.4e-06 55.8 46 52.2
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 1.8e-06 55.5 31 67.7
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 1.8e-06 55.5 31 67.7
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 6.8e-06 53.5 46 50.0


User provided reference genes

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