Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.2e-145 518.5 277 100.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-132 475.3 290 86.9
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.9e-127 457.2 290 85.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.8e-88 329.3 290 64.1
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 4.0e-87 325.5 290 63.8
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.4e-84 316.2 296 61.1
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 8.7e-82 307.8 291 58.8
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.9e-77 292.7 311 53.1
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 3.2e-76 289.3 293 54.3
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 3.5e-75 285.8 296 57.8
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.5e-73 279.6 288 55.9
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.3e-73 278.9 293 54.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 5.6e-73 278.5 293 53.2
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.4e-71 273.9 311 52.1
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 5.3e-71 271.9 294 55.1
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.4e-70 269.2 290 53.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.7e-69 266.9 174 82.2
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-69 266.5 174 81.6
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 2.9e-69 266.2 294 53.7
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.6e-67 260.4 302 52.3
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.3e-66 256.5 317 48.3
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 2.5e-65 253.1 293 51.2
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.1e-63 246.1 296 53.0
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 6.9e-63 245.0 365 44.1
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 6.9e-63 245.0 293 49.8
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.4e-62 242.7 275 52.0
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.0e-61 241.1 382 43.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.2e-61 240.0 315 49.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 2.9e-61 239.6 277 49.5
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 8.5e-61 238.0 288 47.2
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 1.4e-60 237.3 310 47.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.9e-60 236.9 396 40.7
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.1e-59 233.4 320 46.2
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.6e-59 232.3 293 47.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 7.9e-59 231.5 292 51.7
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.0e-58 231.1 306 49.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.0e-58 229.6 277 51.6
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.9e-58 229.2 277 51.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 6.7e-58 228.4 277 51.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 8.7e-58 228.0 293 49.1
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.9e-57 226.9 293 46.8
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.9e-57 226.9 290 48.3
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 2.5e-57 226.5 389 40.6
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 7.4e-57 224.9 263 51.7
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.8e-56 223.0 289 47.1
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 8.2e-56 221.5 301 44.9
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 8.2e-56 221.5 293 49.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.1e-55 221.1 293 45.4
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.4e-55 220.7 276 47.5
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.4e-55 219.9 341 42.5
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 4.1e-55 219.2 339 43.1
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 4.1e-55 219.2 294 49.0
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.1e-55 219.2 292 46.2
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.2e-54 217.6 294 46.6
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 4.5e-54 215.7 293 45.1
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.2e-52 209.1 342 42.1
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 5.5e-52 208.8 309 43.0
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.2e-52 208.4 303 44.6
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-51 206.8 265 46.8
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.6e-51 205.7 297 44.1
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 6.1e-51 205.3 322 40.4
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.1e-51 205.3 343 44.3
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.0e-50 204.5 265 44.5
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-50 204.5 261 46.7
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.0e-50 204.5 232 50.0
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.4e-50 204.1 301 46.8
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 6.7e-50 201.8 286 45.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-49 201.1 341 40.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.1e-49 201.1 174 62.6
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.5e-49 200.7 376 39.4
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 4.3e-49 199.1 330 41.2
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 5.7e-49 198.7 286 45.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 5.7e-49 198.7 295 43.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.7e-49 198.0 349 39.8
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.3e-48 197.6 238 46.2
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-48 197.2 281 43.4
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.8e-48 196.4 311 41.5
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 6.3e-48 195.3 293 43.0
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 8.2e-48 194.9 293 41.6
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.1e-47 194.5 330 39.7
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.4e-47 194.1 308 42.5
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-47 194.1 281 47.3
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-47 193.7 265 46.4
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.8e-47 193.7 313 43.1
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.8e-47 193.7 334 40.4
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.1e-47 192.6 371 39.1
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 5.3e-47 192.2 355 37.5
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 9.1e-47 191.4 351 37.6
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 7.7e-46 188.3 293 41.3
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.0e-45 188.0 274 41.6
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 8.5e-45 184.9 312 40.4
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.4e-44 184.1 376 37.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.2e-44 182.6 257 43.2
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 4.2e-44 182.6 242 46.3
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 4.2e-44 182.6 209 47.8
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.2e-44 182.6 278 42.1
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 7.9e-43 178.3 322 40.4
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-42 177.9 265 46.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 5.2e-42 175.6 263 45.6
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 5.2e-42 175.6 295 40.3
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 8.8e-42 174.9 376 35.9
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-41 174.5 297 42.4
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 5.7e-41 172.2 353 37.7
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 9.7e-41 171.4 176 50.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 2.8e-40 169.9 171 55.0
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.7e-40 169.5 401 34.2
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.3e-40 168.7 258 43.0
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.4e-39 167.5 158 57.6
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.2e-38 164.5 343 37.3
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.2e-37 160.2 215 44.7
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.9e-37 159.8 282 42.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 2.9e-37 159.8 321 37.7
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 6.5e-37 158.7 237 40.9
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.2e-36 155.2 295 41.0
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 9.4e-36 154.8 284 40.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 9.4e-36 154.8 280 39.3
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 4.7e-35 152.5 282 40.4
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 8.8e-34 148.3 369 32.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.2e-33 147.9 245 39.6
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.5e-33 147.5 257 41.6
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 5.7e-33 145.6 291 37.1
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 7.5e-33 145.2 283 38.2
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 7.5e-33 145.2 283 38.2
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.3e-32 144.4 290 36.9
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.3e-32 144.4 290 36.9
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.7e-32 142.9 292 34.2
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 6.3e-32 142.1 163 49.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 8.2e-32 141.7 334 34.1
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 7.0e-31 138.7 291 38.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 7.0e-31 138.7 280 34.6
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.2e-30 137.9 106 65.1
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.0e-30 137.1 284 35.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 3.5e-30 136.3 134 55.2
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.2e-29 133.7 274 36.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.9e-29 133.3 290 34.1
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 7.2e-28 128.6 156 48.1
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 3.6e-27 126.3 152 48.7
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.6e-27 126.3 152 48.7
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 4.7e-27 125.9 278 36.0
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 6.1e-27 125.6 222 36.5
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.0e-26 123.2 257 35.8
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 7.5e-25 118.6 249 36.5
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.3e-24 115.2 223 36.8
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 3.1e-23 113.2 247 34.4
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.6e-22 110.9 190 39.5
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.5e-22 109.8 286 29.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.1e-20 104.8 348 26.7
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.2e-20 102.8 101 52.5
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 6.8e-18 95.5 149 41.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-16 90.1 70 57.1
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 7.7e-14 82.0 277 31.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.3e-13 80.5 229 31.9
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 8.6e-13 78.6 122 42.6
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 5.6e-12 75.9 147 36.7
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.1e-11 73.9 116 38.8
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-10 70.9 90 48.9
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.2e-10 69.3 130 38.5
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.4e-09 66.6 114 34.2
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 3.7e-08 63.2 78 43.6
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.4e-07 60.5 46 58.7
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 3.2e-07 60.1 86 41.9
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.2e-07 60.1 96 45.8
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 5.9e-06 55.8 176 31.2


User provided reference genes

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