Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.4e-70 270.0 126 100.0
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.0e-68 262.3 126 95.2
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.0e-68 262.3 126 95.2
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 5.6e-67 258.1 126 92.9
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.2e-66 256.9 126 93.7
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 8.1e-66 254.2 124 94.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.1e-65 253.8 157 80.3
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 3.1e-65 252.3 124 93.5
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.8e-65 251.1 126 90.5
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 6.8e-65 251.1 124 92.7
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 8.9e-65 250.8 125 92.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.6e-64 249.2 126 89.7
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.4e-64 248.4 125 91.2
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 4.4e-64 248.4 126 91.3
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 5.8e-64 248.1 123 91.9
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 5.8e-64 248.1 123 91.9
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 9.9e-64 247.3 122 93.4
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 9.9e-64 247.3 123 91.9
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.1e-62 241.9 122 91.0
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 9.2e-62 240.7 121 90.1
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 9.2e-62 240.7 126 86.5
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.1e-61 239.6 117 95.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 2.7e-61 239.2 125 86.4
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 4.6e-61 238.4 124 86.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.0e-61 238.0 121 88.4
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.0e-60 237.3 121 89.3
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.7e-60 236.5 127 85.0
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.9e-60 235.3 119 90.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 5.1e-60 235.0 122 86.9
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.1e-59 233.8 122 85.2
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.5e-59 233.4 114 93.9
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 7.3e-59 231.1 115 91.3
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.8e-58 229.2 124 84.7
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.8e-58 229.2 124 84.7
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.8e-58 229.2 124 84.7
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 2.8e-58 229.2 121 86.8
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.6e-58 228.8 114 94.7
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.2e-58 228.0 124 83.9
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.4e-57 226.9 119 86.6
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.4e-57 226.9 121 85.1
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.8e-57 226.5 119 86.6
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.0e-56 223.0 110 91.8
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.4e-56 221.9 146 74.0
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 3.8e-55 218.8 106 94.3
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.8e-55 218.8 106 94.3
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 4.9e-55 218.4 105 95.2
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 4.9e-55 218.4 105 96.2
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.9e-55 218.4 105 96.2
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 8.4e-55 217.6 106 94.3
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.1e-54 217.2 106 92.5
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.4e-54 216.9 105 95.2
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.4e-54 216.1 105 93.3
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.2e-54 215.7 103 96.1
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.2e-54 215.3 105 93.3
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 5.4e-54 214.9 103 96.1
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 9.2e-54 214.2 105 94.3
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 9.2e-54 214.2 105 94.3
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.6e-53 213.4 124 75.8
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.1e-53 213.0 119 81.5
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.7e-53 212.6 103 94.2
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.6e-53 211.8 103 95.1
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 4.6e-53 211.8 100 98.0
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 6.0e-53 211.5 103 95.1
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 7.8e-53 211.1 121 79.3
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 2.3e-52 209.5 103 94.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.0e-52 209.1 103 94.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.0e-52 209.1 103 94.2
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 3.0e-52 209.1 103 94.2
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 5.1e-52 208.4 103 94.2
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 6.6e-52 208.0 103 93.2
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 6.6e-52 208.0 103 93.2
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 8.7e-52 207.6 106 89.6
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 8.7e-52 207.6 107 91.6
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 8.7e-52 207.6 100 97.0
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.1e-51 207.2 103 92.2
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.5e-51 206.8 102 93.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 1.5e-51 206.8 101 93.1
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.9e-51 206.5 105 90.5
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 2.5e-51 206.1 117 80.3
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 3.3e-51 205.7 100 95.0
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 5.6e-51 204.9 121 74.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 5.6e-51 204.9 101 92.1
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 5.6e-51 204.9 100 94.0
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 7.3e-51 204.5 99 96.0
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 7.3e-51 204.5 103 90.3
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 7.3e-51 204.5 119 74.8
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 9.6e-51 204.1 103 91.3
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.8e-50 202.6 100 93.0
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.8e-50 202.6 119 78.2
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 3.6e-50 202.2 126 73.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 3.6e-50 202.2 126 73.0
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 3.6e-50 202.2 105 86.7
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.6e-50 202.2 100 92.0
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 3.6e-50 202.2 99 94.9
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 4.7e-50 201.8 121 78.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 8.1e-50 201.1 102 91.2
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-49 200.3 125 72.8
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.8e-49 199.9 100 91.0
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 5.3e-49 198.4 99 91.9
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.2e-48 197.2 113 84.1
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.5e-48 196.8 134 68.7
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 2.6e-48 196.1 98 89.8
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 5.8e-48 194.9 103 86.4
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 5.8e-48 194.9 100 89.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.7e-47 193.4 98 89.8
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 4.9e-47 191.8 99 89.9
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 8.4e-47 191.0 122 72.1
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 8.4e-47 191.0 122 72.1
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 3.2e-46 189.1 128 71.1
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 3.2e-46 189.1 128 71.1
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 3.2e-46 189.1 94 92.6
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 7.1e-46 188.0 105 81.0
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.6e-45 186.8 128 70.3
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 7.8e-45 184.5 88 94.3
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.7e-44 183.3 98 84.7
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 2.3e-44 183.0 98 84.7
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 3.9e-44 182.2 128 69.5
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.1e-44 181.8 103 80.6
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 6.6e-44 181.4 103 79.6
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.5e-43 180.3 126 68.3
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.9e-43 179.9 96 85.4
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.9e-43 179.9 102 79.4
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.9e-43 179.9 98 85.7
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 9.6e-43 177.6 102 78.4
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 78.2
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 78.2
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 78.2
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 78.2
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 78.2
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 78.2
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 2.8e-42 176.0 101 79.2
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.8e-41 173.3 106 77.4
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.8e-41 173.3 99 78.8
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.4e-41 172.9 92 85.9
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 6.9e-41 171.4 118 71.2
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 5.8e-40 168.3 118 64.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 7.6e-40 167.9 129 62.8
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 7.6e-40 167.9 129 62.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.1e-37 159.8 93 78.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 4.6e-37 158.7 116 67.2
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 3.0e-36 156.0 118 61.9
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-32 144.1 104 67.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 3.4e-32 142.5 95 70.5
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.9e-30 136.7 147 48.3
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.9e-30 136.7 66 95.5
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 4.2e-30 135.6 122 50.8
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.0e-28 131.0 126 54.0
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.9e-28 129.0 81 75.3
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 9.6e-27 124.4 138 50.7
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.8e-26 122.1 84 72.6
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.0e-23 114.4 111 50.5
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.3e-23 114.0 72 75.0
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.0e-20 104.4 50 84.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.8e-20 103.6 94 56.4
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.9e-20 102.4 117 51.3
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.7e-19 97.8 63 71.4
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.1e-17 94.4 44 95.5
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.9e-17 91.7 43 95.3
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.3e-15 87.4 45 86.7
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.3e-15 87.4 43 88.4
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 3.0e-12 76.3 38 89.5
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 3.0e-12 76.3 38 86.8
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 6.3e-10 68.6 40 75.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.9e-06 57.0 72 38.9
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 5.5e-06 55.5 77 35.1
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 5.5e-06 55.5 44 54.5
Cre12.g527500 Chlamydomonas reinhardtii HOM05D002634 ORTHO05D003100 7.2e-06 55.1 77 35.1
Actinidia18910 Actinidia chinensis HOM05D002288 ORTHO05D002894 9.4e-06 54.7 76 35.5
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 9.4e-06 54.7 69 42.0
TWI12G0929 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 9.4e-06 54.7 71 40.8


User provided reference genes

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