Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 0.0e+00 1663.3 1088 100.0
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 9.1e-260 901.0 1092 60.0
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 5.4e-252 875.2 1113 57.8
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 1.4e-236 823.9 960 54.8
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 5.6e-209 732.3 893 59.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 3.8e-173 613.2 972 48.8
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 4.2e-164 583.2 724 62.3
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 1.8e-162 577.8 1005 46.6
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 4.7e-155 553.1 614 52.6
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 2.8e-152 543.9 1002 44.5
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 9.1e-151 538.9 1004 46.3
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 7.7e-150 535.8 1004 46.2
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 1.9e-148 531.2 1011 45.6
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 2.1e-147 527.7 1011 42.3
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 2.1e-147 527.7 984 45.8
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.0e-145 521.2 883 44.7
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 7.5e-145 519.2 985 42.7
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 9.1e-143 512.3 885 42.1
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 4.5e-142 510.0 988 41.5
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 4.5e-142 510.0 875 42.5
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 5.9e-142 509.6 790 45.4
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.2e-139 501.9 994 40.6
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 4.7e-139 500.0 868 44.5
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 2.0e-134 484.6 925 41.7
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 2.0e-134 484.6 879 43.9
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 3.3e-132 477.2 892 47.5
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 2.1e-131 474.6 1018 41.6
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 1.8e-130 471.5 1090 40.1
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.5e-129 468.4 996 44.6
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 2.7e-126 457.6 937 41.5
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 2.7e-126 457.6 978 39.8
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 1.0e-125 455.7 983 41.4
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 2.9e-125 454.1 1129 38.4
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 6.6e-125 453.0 906 43.3
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 8.9e-122 442.6 949 42.3
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 2.6e-121 441.0 786 43.4
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 2.9e-120 437.6 879 40.6
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 3.7e-120 437.2 947 41.3
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 6.4e-120 436.4 998 40.7
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 2.0e-118 431.4 1020 38.2
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.3e-117 428.7 873 40.5
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 3.9e-117 427.2 912 41.8
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 1.2e-115 422.2 813 39.9
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 1.6e-115 421.8 952 40.1
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.6e-115 421.8 957 37.2
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 2.8e-115 421.0 992 44.6
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 3.6e-115 420.6 1042 38.9
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 1.1e-114 419.1 994 36.4
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 5.2e-114 416.8 940 39.8
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.4e-111 408.7 1016 37.6
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 1.9e-111 408.3 960 42.2
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 1.7e-109 401.7 987 39.0
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 2.8e-107 394.4 948 40.8
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 2.3e-106 391.3 1018 36.1
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 2.6e-105 387.9 1000 37.9
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 5.8e-105 386.7 955 39.7
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 9.9e-105 386.0 829 41.7
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 5.4e-103 380.2 971 40.1
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 7.1e-103 379.8 955 39.5
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.6e-102 378.6 952 35.0
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 2.1e-102 378.3 928 37.9
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 1.3e-101 375.6 896 37.6
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 6.6e-101 373.2 873 41.5
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 3.3e-100 370.9 887 38.6
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 7.3e-100 369.8 730 44.8
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 7.3e-100 369.8 722 42.0
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 1.2e-97 362.5 999 35.7
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 5.8e-97 360.1 875 41.6
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 9.9e-97 359.4 732 39.5
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 8.4e-96 356.3 961 38.4
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 2.1e-91 341.7 817 37.1
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 4.7e-91 340.5 739 46.0
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 4.0e-90 337.4 1068 40.4
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 7.8e-86 323.2 799 36.7
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 1.0e-85 322.8 802 36.9
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 1.0e-85 322.8 985 34.9
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 8.1e-83 313.2 741 37.2
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 6.9e-82 310.1 712 44.2
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 4.3e-76 290.8 503 42.3
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 4.0e-66 257.7 998 32.1
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 3.0e-61 241.5 364 45.1
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 9.7e-60 236.5 519 36.8
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 2.9e-56 224.9 786 32.6
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 1.1e-50 206.5 823 28.7
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 7.7e-49 200.3 874 29.6
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 1.3e-48 199.5 802 31.4
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 5.5e-47 194.1 940 31.1
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 4.7e-46 191.0 742 32.9
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 6.1e-46 190.7 990 28.5
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 4.8e-43 181.0 892 33.1
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 6.3e-43 180.6 383 37.3
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 5.3e-42 177.6 1025 29.9
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 2.2e-40 172.2 782 27.6
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 4.2e-39 167.9 921 28.1
Solyc05g013490.4 Solanum lycopersicum HOM05D002002 ORTHO05D008797 2.3e-37 162.2 317 36.3
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 9.7e-36 156.8 564 32.3
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 1.8e-34 152.5 549 33.7
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 2.6e-33 148.7 543 32.8
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 2.6e-33 148.7 543 32.8
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 5.9e-33 147.5 963 29.4
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 1.0e-32 146.7 980 29.8
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 3.0e-29 135.2 324 34.9
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 5.2e-29 134.4 674 33.7
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 1.0e-24 120.2 572 29.9
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 1.2e-22 113.2 277 38.6
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 2.7e-22 112.1 485 28.0
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 8.0e-22 110.5 666 27.2
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 1.7e-19 102.8 141 46.1
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 5.4e-18 97.8 892 27.8
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 7.2e-15 87.4 197 39.1
Actinidia37431 Actinidia chinensis HOM05D002002 ORTHO05D008797 9.2e-10 70.5 147 55.1
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 9.2e-10 70.5 125 40.8
GSVIVG01005755001 Vitis vinifera HOM05D002002 ORTHO05D008797 2.0e-09 69.3 69 63.8
Lsat_1_v5_gn_0_41981 Lactuca sativa HOM05D002002 ORTHO05D008797 1.7e-08 66.2 114 39.5
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 4.3e-07 61.6 74 48.6
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 4.3e-07 61.6 93 44.1


User provided reference genes

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