Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037165 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 3.8e-84 314.7 150 100.0
CSS0048120 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 3.1e-65 251.9 160 80.0
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 7.9e-29 131.0 265 34.0
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 3.3e-27 125.6 128 50.8
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 5.6e-27 124.8 208 38.5
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 2.8e-26 122.5 198 38.9
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 5.3e-25 118.2 196 38.8
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 5.3e-25 118.2 208 36.5
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 6.9e-25 117.9 194 39.7
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.2e-24 117.1 208 36.1
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 3.4e-24 115.5 208 35.1
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 1.3e-23 113.6 197 37.6
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 1.3e-23 113.6 197 37.1
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 2.2e-23 112.8 203 36.5
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 2.2e-23 112.8 203 36.5
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 2.2e-23 112.8 197 37.6
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 2.2e-23 112.8 198 37.4
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 3.8e-23 112.1 209 36.4
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 3.8e-23 112.1 154 42.9
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 6.5e-23 111.3 208 35.1
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 8.4e-23 110.9 193 36.8
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 8.4e-23 110.9 194 37.1
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 8.4e-23 110.9 193 38.3
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.1e-22 110.5 197 36.0
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.1e-22 110.5 197 36.0
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 1.4e-22 110.2 208 35.1
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.9e-22 109.8 184 36.4
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 2.5e-22 109.4 208 34.6
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 2.5e-22 109.4 196 37.2
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 3.2e-22 109.0 208 34.1
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 3.2e-22 109.0 197 36.0
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 4.2e-22 108.6 200 35.5
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 4.2e-22 108.6 197 37.1
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 5.5e-22 108.2 208 34.1
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 7.1e-22 107.8 193 36.8
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 9.3e-22 107.5 208 34.1
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 1.2e-21 107.1 195 35.9
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 1.6e-21 106.7 196 36.2
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 1.6e-21 106.7 197 35.5
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 1.6e-21 106.7 193 36.8
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 2.1e-21 106.3 192 35.4
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 2.1e-21 106.3 208 34.1
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 2.7e-21 105.9 208 34.1
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.7e-21 105.9 197 36.0
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.7e-21 105.9 197 36.0
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 2.7e-21 105.9 198 35.9
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 2.7e-21 105.9 197 35.5
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 2.7e-21 105.9 193 35.8
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 3.5e-21 105.5 203 33.5
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 4.6e-21 105.1 197 36.5
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 4.6e-21 105.1 191 36.1
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 4.6e-21 105.1 208 33.7
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 4.6e-21 105.1 192 34.9
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 6.0e-21 104.8 193 36.8
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 6.0e-21 104.8 196 36.7
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 7.9e-21 104.4 197 36.0
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 7.9e-21 104.4 196 36.2
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 7.9e-21 104.4 208 33.7
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 7.9e-21 104.4 222 32.9
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 1.0e-20 104.0 208 32.7
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 1.3e-20 103.6 208 33.7
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.3e-20 103.6 192 36.5
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.3e-20 103.6 197 36.0
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 1.3e-20 103.6 208 33.7
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 1.3e-20 103.6 190 35.8
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.8e-20 103.2 191 35.6
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 2.3e-20 102.8 190 35.8
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 3.0e-20 102.4 203 34.5
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 3.0e-20 102.4 191 34.6
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 3.0e-20 102.4 208 32.7
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 3.9e-20 102.1 196 34.7
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 6.7e-20 101.3 192 34.4
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 6.7e-20 101.3 193 35.2
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 1.5e-19 100.1 193 36.3
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 1.5e-19 100.1 197 34.0
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 1.9e-19 99.8 193 35.8
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 1.9e-19 99.8 193 34.2
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.9e-19 99.8 92 53.3
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 2.5e-19 99.4 193 34.7
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 2.5e-19 99.4 193 34.7
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.5e-19 99.4 196 33.2
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 2.5e-19 99.4 202 34.2
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 4.3e-19 98.6 203 32.5
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 4.3e-19 98.6 193 34.2
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.3e-19 98.6 203 34.5
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 5.7e-19 98.2 193 35.8
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 5.7e-19 98.2 197 34.5
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 5.7e-19 98.2 193 36.3
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 5.7e-19 98.2 189 36.0
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 5.7e-19 98.2 193 35.8
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 1.6e-18 96.7 190 32.1
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 2.2e-18 96.3 184 34.2
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 2.2e-18 96.3 208 33.2
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 2.8e-18 95.9 193 34.7
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 4.8e-18 95.1 193 34.7
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.8e-18 95.1 193 34.7
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 8.2e-18 94.4 187 33.2
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 8.2e-18 94.4 193 34.2
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 1.4e-17 93.6 193 34.7
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 1.4e-17 93.6 188 34.6
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.4e-17 93.6 196 33.2
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 2.4e-17 92.8 208 31.2
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 3.1e-17 92.4 193 33.2
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 3.1e-17 92.4 189 32.3
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 6.9e-17 91.3 193 32.6
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 9.0e-17 90.9 193 32.1
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 9.0e-17 90.9 189 32.8
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 1.2e-16 90.5 193 32.6
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.5e-16 90.1 193 33.2
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 2.0e-16 89.7 193 32.1
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 2.6e-16 89.4 193 32.1
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 4.5e-16 88.6 207 30.9
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 4.5e-16 88.6 228 28.5
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 4.5e-16 88.6 188 31.9
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 5.9e-16 88.2 193 31.6
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 5.9e-16 88.2 193 32.6
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 7.6e-16 87.8 69 62.3
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 1.3e-15 87.0 198 30.8
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 1.7e-15 86.7 193 31.6
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.7e-15 86.7 192 30.7
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 2.2e-15 86.3 192 32.8
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 2.2e-15 86.3 188 34.6
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 2.9e-15 85.9 208 29.3
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 3.8e-15 85.5 193 31.1
SalBow3G2197 Salvia bowleyana HOM05D003793 ORTHO05D004471 2.5e-14 82.8 71 57.7
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 2.5e-14 82.8 69 58.0
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 3.2e-14 82.4 223 27.4
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 4.2e-14 82.0 202 27.2
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 4.2e-14 82.0 203 28.6
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.2e-14 82.0 62 62.9
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 5.5e-14 81.6 60 58.3
Nitab4.5_0006250g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 9.3e-14 80.9 53 71.7
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 7.9e-13 77.8 61 57.4
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.0e-12 77.4 60 58.3
ATR1057G001 Amborella trichopoda HOM05D003793 ORTHO05D038313 3.0e-12 75.9 54 63.0
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 6.7e-12 74.7 186 28.0
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 6.7e-12 74.7 69 52.2
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.1e-11 73.9 191 25.7
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 4.3e-11 72.0 165 31.5
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 9.7e-11 70.9 187 28.9
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 3.7e-10 68.9 54 61.1
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.1e-09 67.4 69 40.6
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.1e-09 67.4 69 40.6
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 3.1e-09 65.9 38 73.7
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.1e-09 65.9 69 40.6
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 4.1e-09 65.5 38 76.3
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 4.1e-09 65.5 184 28.3
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 6.9e-09 64.7 38 71.1
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 6.9e-09 64.7 54 57.4
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 6.9e-09 64.7 69 40.6
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 3.4e-08 62.4 38 65.8
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 5.9e-08 61.6 33 75.8
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 1.3e-07 60.5 51 54.9
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.2e-07 59.7 38 63.2
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 2.2e-07 59.7 63 47.6
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 4.2e-06 55.5 53 50.9
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 5.5e-06 55.1 42 64.3
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 7.2e-06 54.7 32 68.8


User provided reference genes

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