Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.4e-302 1040.8 500 100.0
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-300 1035.0 500 99.4
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.4e-300 1034.6 500 99.4
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.1e-300 1033.9 500 99.4
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.1e-299 1031.6 500 99.0
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-299 1029.6 500 98.8
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.6e-298 1026.2 500 98.6
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-297 1025.8 500 98.6
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.5e-297 1022.7 500 97.8
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.1e-296 1019.6 500 97.8
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.2e-295 1016.9 500 97.6
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.8e-295 1016.5 500 97.6
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.2e-293 1011.5 500 97.4
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 8.6e-213 743.8 500 71.0
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.0e-210 736.9 509 69.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 8.3e-208 727.2 499 70.1
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 3.5e-206 721.8 502 68.9
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 3.1e-202 708.8 498 68.5
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 5.8e-201 704.5 499 68.7
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.7e-200 703.0 474 70.3
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 3.2e-199 698.7 479 69.5
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 4.1e-199 698.4 497 68.0
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 7.0e-199 697.6 504 68.8
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 6.6e-197 691.0 470 69.4
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 6.2e-195 684.5 501 66.5
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 2.3e-194 682.6 498 65.5
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 6.8e-194 681.0 499 66.3
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 3.4e-193 678.7 497 66.2
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 2.3e-189 666.0 497 65.4
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 5.6e-188 661.4 402 76.6
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 9.5e-188 660.6 503 64.8
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 6.8e-186 654.4 496 64.1
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.2e-185 653.7 509 63.9
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 2.2e-184 649.4 502 63.5
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 6.4e-184 647.9 502 63.9
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.1e-183 647.1 500 62.0
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.4e-183 646.0 400 75.2
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 3.2e-183 645.6 492 65.2
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 9.2e-183 644.0 404 74.5
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.2e-182 643.7 400 74.0
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 1.6e-182 643.3 360 80.8
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 2.7e-182 642.5 404 76.5
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 7.8e-182 641.0 496 63.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 7.8e-182 641.0 400 74.2
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.3e-181 640.2 489 64.4
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 3.0e-181 639.0 496 63.3
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 3.0e-181 639.0 415 71.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 1.1e-180 637.1 499 62.5
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 1.5e-180 636.7 499 63.3
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 3.3e-180 635.6 500 62.8
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 4.3e-180 635.2 494 63.4
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.2e-179 633.6 500 63.2
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 2.8e-179 632.5 398 74.6
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 1.8e-178 629.8 409 71.9
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.5e-177 626.7 502 62.7
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 4.4e-177 625.2 405 70.6
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 4.4e-177 625.2 507 61.1
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 5.8e-177 624.8 498 62.0
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 5.8e-177 624.8 500 60.6
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 9.9e-177 624.0 479 64.3
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 1.3e-176 623.6 501 61.3
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.9e-175 619.8 378 74.1
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 2.4e-175 619.4 400 72.5
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 3.5e-174 615.5 492 62.0
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 7.8e-174 614.4 487 62.6
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.0e-173 614.0 494 61.7
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.7e-173 613.2 400 70.2
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.7e-173 613.2 493 59.2
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 2.5e-172 609.4 350 82.6
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 5.6e-172 608.2 487 62.0
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 5.6e-172 608.2 400 71.0
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 1.4e-170 603.6 400 70.2
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 1.8e-170 603.2 402 69.9
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.8e-170 603.2 401 70.6
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 2.0e-169 599.7 396 71.2
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 3.4e-169 599.0 506 59.5
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 7.6e-169 597.8 393 71.8
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.9e-168 595.9 502 60.0
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 4.6e-166 588.6 403 67.7
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 7.8e-166 587.8 370 73.2
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 5.1e-165 585.1 499 57.9
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 6.0e-158 561.6 372 69.9
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 7.9e-158 561.2 443 60.7
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 7.9e-158 561.2 359 72.1
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 1.5e-156 557.0 478 58.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 4.3e-156 555.4 430 62.6
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 4.8e-155 552.0 391 66.0
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.3e-152 543.9 508 54.9
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 6.0e-150 535.0 489 57.5
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 3.9e-149 532.3 459 57.3
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 1.5e-148 530.4 350 69.4
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 5.9e-129 465.3 391 57.0
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.3e-128 464.2 386 58.5
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 7.4e-124 448.4 293 72.7
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 6.1e-118 428.7 353 59.8
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 8.0e-118 428.3 477 50.3
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.8e-109 400.6 407 49.6
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 9.5e-95 351.7 296 56.4
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.1e-90 338.2 209 74.6
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.0e-85 321.6 433 40.0
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 8.3e-83 312.0 443 39.5
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.5e-71 274.6 447 36.9
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 7.8e-65 252.3 302 45.0
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-62 245.0 400 37.5
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.8e-61 241.1 162 69.8
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 6.4e-43 179.5 224 47.3
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.7e-41 174.1 322 31.1
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 2.0e-28 131.3 308 32.1
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.3e-27 128.6 89 69.7
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 2.5e-23 114.4 295 29.2
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 2.5e-18 97.8 73 64.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 6.7e-16 89.7 59 64.4
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 9.4e-10 69.3 89 40.4


User provided reference genes

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