Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 1.2e-165 586.6 333 100.0
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 1.5e-117 426.8 343 72.9
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 2.6e-109 399.4 345 68.1
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 3.4e-109 399.1 337 68.8
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 2.9e-108 396.0 279 74.2
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 3.8e-108 395.6 283 72.4
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 5.0e-108 395.2 290 74.5
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 1.9e-107 393.3 333 65.5
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 4.2e-107 392.1 287 73.5
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 4.2e-107 392.1 337 67.7
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 9.4e-107 391.0 286 70.3
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 1.2e-106 390.6 346 66.8
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 3.0e-105 386.0 284 72.5
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 5.1e-105 385.2 349 62.8
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 1.1e-104 384.0 284 72.9
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 2.6e-104 382.9 243 80.7
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 5.7e-104 381.7 350 66.0
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 9.7e-104 380.9 308 67.5
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 3.7e-103 379.0 270 73.0
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 4.8e-103 378.6 220 83.6
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 8.2e-103 377.9 292 68.2
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.1e-102 377.5 248 76.6
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 1.1e-102 377.5 229 81.2
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 1.8e-102 376.7 220 82.3
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 2.4e-102 376.3 245 78.4
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 3.1e-102 375.9 246 78.0
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 7.0e-102 374.8 347 64.0
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 9.1e-102 374.4 248 76.2
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.2e-101 374.0 291 71.8
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 1.5e-101 373.6 255 71.4
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 3.5e-101 372.5 291 71.5
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 1.0e-100 370.9 245 74.7
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 1.3e-100 370.5 260 76.2
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 2.2e-100 369.8 331 63.7
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 2.2e-100 369.8 218 81.7
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 3.8e-100 369.0 246 74.0
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 6.5e-100 368.2 290 65.9
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 3.2e-99 365.9 254 71.7
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 7.2e-99 364.8 254 71.3
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 1.2e-98 364.0 252 73.0
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 1.6e-98 363.6 218 82.6
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 6.1e-98 361.7 254 71.7
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 8.0e-98 361.3 220 81.4
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 2.3e-97 359.8 225 77.8
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 8.8e-97 357.8 333 64.3
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 8.8e-97 357.8 289 68.9
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 2.6e-96 356.3 363 57.6
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 4.4e-96 355.5 373 57.1
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.4e-96 355.5 243 75.3
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 9.7e-96 354.4 228 73.2
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 1.3e-95 354.0 204 86.3
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 6.3e-95 351.7 271 68.3
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 8.2e-95 351.3 221 77.8
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 1.1e-94 350.9 211 82.0
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 7.0e-94 348.2 220 75.0
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 7.0e-94 348.2 246 70.7
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 7.0e-94 348.2 246 70.7
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 9.1e-94 347.8 214 78.0
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 1.1e-91 340.9 220 75.0
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 1.5e-91 340.5 313 61.3
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 2.1e-90 336.7 294 61.6
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 1.4e-89 334.0 242 68.6
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 4.0e-89 332.4 198 82.8
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 2.6e-88 329.7 281 63.3
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 9.7e-88 327.8 233 69.5
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 9.7e-88 327.8 231 73.2
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 1.3e-87 327.4 289 59.5
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.7e-87 327.0 297 58.9
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 1.1e-86 324.3 299 64.2
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 1.4e-86 323.9 283 61.5
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 1.2e-85 320.9 257 64.6
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 4.5e-85 318.9 196 80.1
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.2e-84 316.6 197 76.6
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 2.2e-84 316.6 240 65.8
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 5.0e-84 315.5 196 79.6
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 8.5e-84 314.7 254 69.3
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 2.5e-83 313.2 173 86.7
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 2.1e-82 310.1 222 69.8
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.0e-81 307.8 345 50.1
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 4.4e-80 302.4 176 80.7
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 2.8e-79 299.7 293 57.7
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 8.3e-79 298.1 243 60.5
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 1.4e-78 297.4 216 70.4
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 2.4e-78 296.6 213 71.4
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 4.1e-78 295.8 214 67.8
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 7.7e-77 291.6 204 67.2
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 2.9e-76 289.7 219 66.7
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 9.5e-75 284.6 228 64.0
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 2.1e-74 283.5 216 66.7
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 5.2e-73 278.9 207 62.8
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 5.2e-73 278.9 240 59.2
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 1.7e-71 273.9 346 53.5
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 1.5e-67 260.8 285 52.3
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 4.7e-66 255.8 262 55.0
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 4.7e-66 255.8 262 55.0
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 1.4e-62 244.2 240 56.2
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 4.1e-62 242.7 202 58.9
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 1.2e-61 241.1 265 51.7
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 5.0e-60 235.7 179 66.5
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.1e-59 234.6 210 57.1
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 3.1e-57 226.5 254 48.4
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 1.3e-55 221.1 168 63.7
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 2.9e-55 219.9 194 61.9
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 7.1e-54 215.3 215 51.6
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 8.6e-52 208.4 159 67.9
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 9.5e-51 204.9 285 48.8
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 1.6e-50 204.1 159 66.7
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 2.1e-50 203.8 217 48.8
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 2.6e-48 196.8 171 66.7
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 9.6e-43 178.3 309 40.5
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 1.1e-38 164.9 90 90.0
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 2.1e-37 160.6 90 85.6
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 7.8e-37 158.7 85 87.1
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 3.1e-25 120.2 234 32.5
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 5.8e-24 115.9 69 84.1
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 2.1e-21 107.5 62 87.1
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 2.3e-20 104.0 154 41.6
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 7.4e-19 99.0 164 33.5
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 1.2e-16 91.7 177 32.8
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 1.8e-12 77.8 48 81.2
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 3.0e-12 77.0 48 83.3
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 1.9e-11 74.3 67 56.7
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 3.4e-08 63.5 67 55.2
vmacro12756 Vaccinium macrocarpon HOM05D006516 ORTHO05D008083 2.5e-06 57.4 31 77.4
vmacro12757 Vaccinium macrocarpon HOM05D006516 ORTHO05D008083 9.3e-06 55.5 33 72.7


User provided reference genes

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