Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.2e-134 483.4 280 100.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 3.3e-113 412.1 224 90.2
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 2.4e-111 406.0 224 90.2
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-110 403.3 223 88.3
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 3.4e-110 402.1 223 89.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 7.6e-110 401.0 223 87.9
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.6e-110 401.0 223 87.9
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.6e-110 401.0 223 87.9
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.6e-110 401.0 223 87.9
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.0e-109 400.6 224 87.9
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.0e-109 400.6 219 88.6
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.0e-109 400.6 223 89.2
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 2.9e-109 399.1 224 87.5
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.9e-108 396.4 218 89.4
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.5e-108 396.0 209 92.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.5e-108 396.0 224 86.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.5e-108 396.0 224 87.1
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.2e-108 395.6 216 89.4
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 4.2e-108 395.2 222 86.0
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 4.2e-108 395.2 216 88.9
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 5.5e-108 394.8 218 88.5
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 5.5e-108 394.8 221 86.9
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 5.5e-108 394.8 218 88.1
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 5.5e-108 394.8 218 89.0
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 7.1e-108 394.4 221 86.9
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 9.3e-108 394.0 222 86.5
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 9.3e-108 394.0 224 85.7
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 1.6e-107 393.3 224 86.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.6e-107 393.3 223 86.5
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.6e-107 393.3 221 87.3
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.1e-107 392.9 261 78.5
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.7e-107 392.5 224 86.2
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.7e-107 392.5 222 86.0
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 3.5e-107 392.1 217 88.5
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.5e-107 392.1 228 85.5
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 4.6e-107 391.7 221 87.3
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 4.6e-107 391.7 221 85.5
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 4.6e-107 391.7 204 91.2
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 7.9e-107 391.0 217 88.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 7.9e-107 391.0 261 79.3
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 7.9e-107 391.0 222 86.5
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.0e-106 390.6 216 88.0
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 1.0e-106 390.6 217 88.5
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.0e-106 390.6 217 88.9
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.0e-106 390.6 219 86.3
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.3e-106 390.2 241 82.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-106 389.8 218 88.1
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.8e-106 389.8 201 93.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 2.3e-106 389.4 218 87.2
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 2.3e-106 389.4 217 88.5
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 2.3e-106 389.4 217 88.0
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.3e-106 389.4 220 86.8
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 3.0e-106 389.0 201 93.0
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 3.9e-106 388.7 204 92.2
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 3.9e-106 388.7 221 86.4
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.9e-106 388.7 261 79.7
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.9e-106 388.7 261 79.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 5.1e-106 388.3 217 88.0
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 8.7e-106 387.5 207 90.3
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 8.7e-106 387.5 217 87.6
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 8.7e-106 387.5 217 87.6
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 8.7e-106 387.5 208 88.9
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.1e-105 387.1 219 86.3
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.5e-105 386.7 222 85.6
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.9e-105 386.3 222 85.6
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.5e-105 386.0 216 88.0
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.5e-105 386.0 222 86.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.5e-105 386.0 224 86.6
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 3.3e-105 385.6 217 87.6
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 3.3e-105 385.6 203 91.6
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 3.3e-105 385.6 223 84.8
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 4.3e-105 385.2 216 87.5
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 4.3e-105 385.2 201 91.5
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 5.7e-105 384.8 208 90.4
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 5.7e-105 384.8 216 88.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 7.4e-105 384.4 202 91.1
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 7.4e-105 384.4 217 87.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 7.4e-105 384.4 216 88.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.3e-104 383.6 201 92.5
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 1.3e-104 383.6 216 88.0
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.3e-104 383.6 215 87.0
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.6e-104 383.3 216 87.0
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 2.1e-104 382.9 216 87.0
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 3.7e-104 382.1 216 87.0
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 3.7e-104 382.1 263 84.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.7e-104 382.1 223 84.8
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 8.2e-104 380.9 211 89.1
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.4e-103 379.4 214 87.9
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 1.0e-101 374.0 203 88.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 2.1e-99 366.3 217 83.9
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.0e-98 364.0 201 85.6
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 3.9e-98 362.1 201 85.1
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 6.7e-98 361.3 216 83.8
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.5e-97 360.1 323 62.2
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 9.7e-97 357.5 210 82.4
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 1.3e-93 347.1 230 78.3
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 2.9e-93 345.9 216 80.1
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 8.5e-93 344.4 197 84.3
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.4e-92 343.6 195 86.7
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 5.1e-90 335.1 219 78.1
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.4e-84 317.0 201 75.6
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.7e-83 312.8 162 92.0
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.5e-76 289.7 198 71.7
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 4.4e-73 278.9 158 89.2
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.8e-72 275.4 178 77.0
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 2.6e-70 269.6 158 86.7
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.9e-68 263.5 150 84.0
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.1e-63 247.7 138 90.6
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.0e-63 245.0 158 78.5
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.0e-63 245.0 143 83.2
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 7.0e-63 245.0 138 89.1
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.1e-63 244.6 143 84.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.5e-60 237.3 138 88.4
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.2e-59 234.2 133 88.7
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.6e-59 233.8 138 85.5
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.1e-59 231.9 191 66.0
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 8.0e-59 231.5 139 79.9
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 4.9e-56 222.2 143 80.4
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.7e-46 189.9 114 84.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 6.6e-45 185.3 122 79.5
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.1e-44 184.5 163 57.1
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 5.6e-44 182.2 117 81.2
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.6e-43 180.6 94 92.6
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 9.8e-41 171.4 104 77.9
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.3e-40 168.3 130 67.7
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-39 167.5 86 94.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 3.5e-30 136.3 90 77.8
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.6e-30 136.0 66 93.9
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 2.1e-27 127.1 194 44.3
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.1e-26 124.8 71 83.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.4e-23 114.4 93 62.4
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.3e-21 107.1 71 80.3
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 5.1e-21 105.9 70 78.6
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.8e-18 97.4 55 81.8
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 5.2e-18 95.9 55 80.0
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.2e-15 86.7 50 80.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 6.0e-06 55.8 59 49.2


User provided reference genes

Program Settings