Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 0.0e+00 1563.1 794 100.0
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 0.0e+00 1219.9 764 83.0
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 0.0e+00 1203.3 753 83.1
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 0.0e+00 1200.3 778 80.8
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 0.0e+00 1152.1 763 79.4
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 0.0e+00 1128.2 750 77.1
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 0.0e+00 1120.1 787 77.5
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 0.0e+00 1115.9 750 76.4
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 0.0e+00 1114.8 750 76.3
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 0.0e+00 1113.6 752 76.7
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 0.0e+00 1110.1 752 75.5
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 0.0e+00 1109.4 750 76.3
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 0.0e+00 1108.6 751 75.4
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 0.0e+00 1105.1 752 76.2
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 0.0e+00 1099.0 750 76.3
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 0.0e+00 1097.0 752 75.7
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 0.0e+00 1096.6 801 74.5
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 0.0e+00 1082.0 750 75.1
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 0.0e+00 1081.2 751 73.6
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 0.0e+00 1080.9 731 77.4
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 0.0e+00 1078.5 753 73.3
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 0.0e+00 1076.6 750 75.1
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 5.4e-312 1074.7 750 73.7
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 5.4e-312 1074.3 751 73.0
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 5.4e-312 1074.3 729 75.9
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.2e-311 1072.0 753 74.5
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.8e-310 1068.9 750 74.3
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 3.2e-310 1068.1 750 74.3
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 4.1e-310 1067.8 750 74.0
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 3.5e-309 1064.7 753 72.5
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 5.9e-309 1063.9 753 72.4
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 7.7e-309 1063.5 750 74.7
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 1.3e-308 1062.8 756 72.8
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 1.5e-307 1059.3 756 72.1
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 3.3e-307 1058.1 753 72.1
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 1.2e-306 1056.2 751 73.6
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 3.6e-306 1054.7 756 72.4
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.8e-305 1052.4 752 73.0
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 2.3e-305 1052.0 750 73.1
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 3.0e-305 1051.6 750 73.3
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 1.2e-304 1049.7 750 72.7
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 1.2e-304 1049.7 750 73.5
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 3.4e-304 1048.1 753 71.7
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 1.7e-303 1045.8 751 72.6
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 2.2e-303 1045.4 750 71.5
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 3.7e-303 1044.6 756 71.7
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 3.7e-303 1044.6 750 73.3
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 8.3e-303 1043.5 753 70.9
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 8.3e-303 1043.5 753 71.4
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 5.4e-302 1040.8 750 73.2
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 7.0e-302 1040.4 756 71.6
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 9.2e-302 1040.0 761 70.6
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 9.2e-302 1040.0 750 73.2
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 9.2e-302 1040.0 750 70.8
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 1.2e-301 1039.6 779 71.0
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 1.6e-301 1039.3 750 72.9
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 2.7e-301 1038.5 761 70.4
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 7.8e-301 1036.9 753 71.3
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 1.0e-300 1036.6 750 71.2
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 1.7e-300 1035.8 825 68.0
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 6.6e-300 1033.9 750 72.9
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 1.9e-299 1032.3 750 71.1
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 7.3e-299 1030.4 750 72.5
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 2.1e-298 1028.9 755 72.1
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 3.1e-297 1025.0 752 71.9
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 1.9e-294 1015.8 747 70.4
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 5.4e-294 1014.2 753 70.7
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 7.0e-294 1013.8 755 71.5
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 8.9e-289 996.9 748 69.1
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 4.4e-288 994.6 748 69.0
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 6.4e-287 990.7 748 68.7
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.1e-286 989.9 748 68.7
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 9.2e-286 986.9 748 68.6
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 3.9e-284 981.5 748 68.3
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 2.8e-282 975.3 753 69.1
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 2.3e-281 972.2 752 66.1
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 5.2e-281 971.1 750 67.6
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 5.4e-278 961.1 757 66.3
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 5.1e-276 954.5 760 65.9
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 1.1e-275 953.4 756 66.0
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.6e-274 949.5 757 65.9
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 4.0e-273 944.9 756 65.7
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 8.9e-273 943.7 756 65.7
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 1.2e-272 943.3 756 65.7
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 2.0e-272 942.6 756 65.7
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 2.6e-272 942.2 756 65.6
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 2.6e-272 942.2 756 65.6
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 4.9e-271 937.9 831 62.8
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 4.9e-271 937.9 750 68.3
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 1.1e-270 936.8 754 65.4
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 3.2e-270 935.3 770 64.5
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 5.4e-270 934.5 754 64.9
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 6.0e-269 931.0 756 64.8
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 1.0e-268 930.2 750 65.3
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 2.3e-268 929.1 780 63.5
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 5.1e-268 927.9 756 64.6
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 5.1e-268 927.9 756 64.6
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 6.2e-266 921.0 765 64.4
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 5.8e-264 914.4 619 76.7
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.7e-263 912.9 752 65.6
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 1.2e-253 880.2 755 62.9
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 6.0e-253 877.9 768 58.7
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 3.9e-252 875.2 755 63.8
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 9.0e-249 864.0 603 73.3
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 2.9e-247 859.0 751 58.3
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 2.1e-242 842.8 756 59.9
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 3.1e-241 839.0 751 59.0
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 9.0e-241 837.4 749 57.1
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 5.9e-240 834.7 769 57.2
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 2.8e-234 815.8 716 59.2
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 6.3e-226 788.1 573 71.9
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 9.4e-222 774.2 594 68.4
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 2.0e-216 756.5 753 57.9
Cpa.g.sc391.3 Carica papaya HOM05D004313 ORTHO05D005036 8.2e-210 734.6 581 67.0
SEGI_31090 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 9.4e-206 721.1 690 54.9
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 5.4e-201 705.3 426 85.2
HPP92_025604 Vanilla planifolia HOM05D004313 ORTHO05D005036 2.1e-189 666.8 556 62.2
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 1.2e-187 661.0 769 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3833 Anthoceros agrestis HOM05D004313 ORTHO05D005036 2.9e-186 656.4 775 45.5
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 4.3e-182 642.5 753 45.4
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 2.8e-181 639.8 772 43.8
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 3.2e-177 626.3 756 45.0
SEGI_35789 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 1.5e-115 421.4 430 52.1
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 5.9e-91 339.7 255 72.2
Cre02.g097250 Chlamydomonas reinhardtii HOM05D004313 ORTHO05D005036 1.8e-63 248.4 843 26.0
Dinv13119 Davidia involucrata HOM05D004313 ORTHO05D005036 2.7e-59 234.6 156 79.5
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 5.6e-57 226.9 186 61.3
Cpa.g.sc391.2 Carica papaya HOM05D004313 ORTHO05D005036 9.5e-57 226.1 143 79.7
PRCOL_00006613 Prasinoderma coloniale HOM05D004313 ORTHO05D005036 1.1e-41 176.0 801 25.2
Cfa021668 Carpinus fangiana HOM05D004313 ORTHO05D005036 1.3e-29 136.0 730 20.7
Dinv13118 Davidia involucrata HOM05D004313 ORTHO05D005036 3.0e-26 124.8 74 83.8
HPP92_025645 Vanilla planifolia HOM05D004313 ORTHO05D005036 2.9e-21 108.2 205 37.6
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.6e-19 102.4 649 22.5
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.6e-19 102.4 649 22.5
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 1.5e-17 95.9 543 22.8
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.5e-17 95.1 695 23.0
PSO832G2622 Papaver somniferum HOM05D004313 ORTHO05D005036 3.3e-17 94.7 89 60.7
PSO591G0396 Papaver somniferum HOM05D000007 ORTHO05D000017 4.3e-17 94.4 129 45.7
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 1.6e-16 92.4 713 23.6
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.8e-15 89.0 685 23.1
MELO3C035435.2 Cucumis melo HOM05D004313 ORTHO05D005036 4.0e-15 87.8 52 80.8
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 1.2e-14 86.3 704 21.4
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 1.5e-14 85.9 496 22.6
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.3e-13 82.8 513 22.2
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.7e-13 82.4 704 20.9
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 2.9e-13 81.6 519 23.3
MELO3C031896.2 Cucumis melo HOM05D004313 ORTHO05D005036 2.9e-13 81.6 67 62.7
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 4.9e-13 80.9 686 20.8
HanXRQChr04g0111761 Helianthus annuus HOM05D004313 ORTHO05D005036 1.9e-12 79.0 64 65.6
HanXRQChr12g0381491 Helianthus annuus HOM05D004313 ORTHO05D005036 1.9e-12 79.0 64 65.6
HanXRQChr15g0485871 Helianthus annuus HOM05D004313 ORTHO05D005036 2.5e-12 78.6 55 74.5
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 4.2e-12 77.8 512 21.9
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 4.2e-12 77.8 509 22.8
Cfa012794 Carpinus fangiana HOM05D004313 ORTHO05D005036 7.1e-12 77.0 57 68.4
CAN.G81.3 Capsicum annuum HOM05D000323 ORTHO05D000201 1.6e-11 75.9 116 44.0
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 3.0e-10 71.6 695 20.7
QL10p004648 Quercus lobata HOM05D001829 ORTHO05D005036 1.9e-09 68.9 70 50.0
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.3e-09 68.2 693 19.8
Haze_06373 Corylus avellana HOM05D004313 ORTHO05D005036 4.3e-09 67.8 44 75.0
Prupe.6G220700 Prunus persica HOM05D004313 ORTHO05D005036 2.2e-08 65.5 51 62.7
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 4.8e-08 64.3 638 20.1
HanXRQChr09g0243671 Helianthus annuus HOM05D004313 ORTHO05D005036 6.3e-08 63.9 81 51.9


User provided reference genes

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