Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037103 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D110586 4.0e-133 478.0 230 100.0
Rhsim12G0137200 Rhododendron simsii HOM05D005435 ORTHO05D007370 6.9e-08 62.0 207 32.4
Haze_20541 Corylus avellana HOM05D005435 ORTHO05D007370 2.0e-07 60.5 72 48.6
Actinidia33394 Actinidia chinensis HOM05D005435 ORTHO05D007370 2.2e-06 57.0 28 89.3
CAN.G1425.24 Capsicum annuum HOM05D005435 ORTHO05D007370 2.2e-06 57.0 28 89.3
Nitab4.5_0008233g0020 Nicotiana tabacum HOM05D005435 ORTHO05D007370 2.2e-06 57.0 28 89.3
CSS0000486 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D007370 2.9e-06 56.6 34 85.3
CiPaw.09G172100 Carya illinoinensis HOM05D005435 ORTHO05D007370 2.9e-06 56.6 35 85.7
FAN16G2384 Fragaria x ananassa HOM05D005435 ORTHO05D007370 3.8e-06 56.2 46 60.9
AL6G12730 Arabidopsis lyrata HOM05D005435 ORTHO05D007370 4.9e-06 55.8 39 79.5
AT3G46100 Arabidopsis thaliana HOM05D005435 ORTHO05D007370 4.9e-06 55.8 39 79.5
CSS0046763 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.9e-06 55.8 41 65.9
ECA238G1020 Erigeron canadensis HOM05D005435 ORTHO05D007370 4.9e-06 55.8 23 100.0
HanXRQChr14g0454441 Helianthus annuus HOM05D005435 ORTHO05D007370 4.9e-06 55.8 23 100.0
Lsat_1_v5_gn_2_123940 Lactuca sativa HOM05D005435 ORTHO05D007370 4.9e-06 55.8 23 100.0
Solyc03g119280.3 Solanum lycopersicum HOM05D005435 ORTHO05D007370 4.9e-06 55.8 23 100.0
Sopen03g038160 Solanum pennellii HOM05D005435 ORTHO05D007370 4.9e-06 55.8 23 100.0
GSVIVG01025735001 Vitis vinifera HOM05D005435 ORTHO05D007370 4.9e-06 55.8 35 80.0
Atru.chr8.1802 Acer truncatum HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
Aa31LG1G21750 Aethionema arabicum HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Ah.08g211610 Amaranthus hybridus HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
MSTRG.10790 Avicennia marina HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
EL10Ac7g16635 Beta vulgaris HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
BcaNung05574 Brassica carinata HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
CANSAT80G1523 Cannabis sativa HOM05D005435 ORTHO05D007370 6.4e-06 55.5 50 62.0
CARHR209940 Cardamine hirsuta HOM05D005435 ORTHO05D007370 6.4e-06 55.5 47 68.1
Cfa017616 Carpinus fangiana HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Cc06_g19340 Coffea canephora HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
DCAR_017682 Daucus carota HOM05D005435 ORTHO05D007370 6.4e-06 55.5 44 65.9
Dinv03347 Davidia involucrata HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Dinv29103 Davidia involucrata HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
FvH4_3g29130 Fragaria vesca HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
FAN21G2931 Fragaria x ananassa HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
FAN25G0236 Fragaria x ananassa HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
MD04G1093200 Malus domestica HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
Manes.08G010700 Manihot esculenta HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Nitab4.5_0003433g0040 Nicotiana tabacum HOM05D005435 ORTHO05D007370 6.4e-06 55.5 35 80.0
Oeu022974.1 Olea europaea HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Potri.006G124400 Populus trichocarpa HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
Sabra06G0098400 Salix brachista HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
SalBow6G0607 Salvia bowleyana HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Sc20g0005470 Simmondsia chinensis HOM05D005435 ORTHO05D007370 6.4e-06 55.5 28 85.7
SGA_v2.0_scaffold105G30289 Striga asiatica HOM05D005435 ORTHO05D007370 6.4e-06 55.5 31 90.3
THA.LOC104826914 Tarenaya hassleriana HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
vmacro16401 Vaccinium macrocarpon HOM05D005435 ORTHO05D007370 6.4e-06 55.5 34 85.3
Migut.J01655 Erythranthe guttata HOM05D005435 ORTHO05D007370 8.4e-06 55.1 34 82.4
Thhalv10013386m.g Eutrema salsugineum HOM05D005435 ORTHO05D007370 8.4e-06 55.1 34 82.4
Lj3C986G3 Lonicera japonica HOM05D005435 ORTHO05D007370 8.4e-06 55.1 31 90.3
MD12G1112900 Malus domestica HOM05D005435 ORTHO05D007370 8.4e-06 55.1 34 82.4
Manes.14G161100 Manihot esculenta HOM05D005435 ORTHO05D007370 8.4e-06 55.1 24 87.5
QL07p043246 Quercus lobata HOM05D005435 ORTHO05D007370 8.4e-06 55.1 34 82.4
Sed0000088 Sechium edule HOM05D005435 ORTHO05D007370 8.4e-06 55.1 34 85.3
Hund20359 Selenicereus undatus HOM05D005435 ORTHO05D007370 8.4e-06 55.1 38 68.4
TAR633G1880 Trochodendron aralioides HOM05D005435 ORTHO05D007370 8.4e-06 55.1 34 85.3


User provided reference genes

Program Settings