Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 3.0e-179 631.7 315 100.0
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 2.5e-109 399.4 385 57.4
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 6.2e-100 368.2 312 62.2
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 2.1e-87 326.6 181 90.6
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 3.1e-83 312.8 367 50.7
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 3.2e-80 302.8 328 52.1
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 3.5e-63 246.1 378 39.9
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.8e-62 243.8 378 39.9
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 2.6e-58 229.9 378 38.1
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 2.2e-57 226.9 210 56.2
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 2.9e-57 226.5 365 39.5
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 5.5e-56 222.2 305 41.3
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 1.5e-53 214.2 372 37.6
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 1.5e-53 214.2 373 37.3
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 1.5e-53 214.2 366 39.9
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.9e-53 213.8 255 45.9
Actinidia00276 Actinidia chinensis HOM05D002925 ORTHO05D003247 2.8e-52 209.9 166 66.9
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 1.8e-51 207.2 351 39.0
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.2e-50 204.5 141 71.6
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.5e-50 204.1 365 36.7
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.5e-50 202.6 311 41.8
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.5e-50 202.6 311 41.8
CSS0008363 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 5.8e-50 202.2 131 78.6
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 5.5e-48 195.7 366 36.9
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 1.2e-47 194.5 366 36.6
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 1.6e-47 194.1 303 40.3
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 1.8e-46 190.7 374 34.5
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 6.7e-46 188.7 301 38.5
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.5e-45 187.6 369 36.9
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 2.5e-45 186.8 312 41.7
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 4.3e-45 186.0 200 47.5
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 1.6e-44 184.1 355 35.2
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.2e-44 183.7 224 45.5
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 2.8e-44 183.3 368 35.3
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 4.8e-44 182.6 363 35.0
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.2e-42 177.9 208 48.6
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 1.7e-41 174.1 221 44.8
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.2e-41 173.7 180 50.6
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 8.5e-41 171.8 245 41.6
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 7.2e-40 168.7 311 37.3
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 9.4e-40 168.3 201 44.8
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 2.7e-39 166.8 365 34.8
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 2.3e-38 163.7 374 33.7
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 1.5e-37 161.0 314 33.8
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 4.3e-37 159.5 314 37.6
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 7.4e-37 158.7 361 33.8
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 7.4e-37 158.7 219 38.4
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 9.7e-37 158.3 210 39.5
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.7e-36 157.5 192 43.2
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.2e-36 157.1 217 41.9
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 8.2e-36 155.2 202 41.1
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.8e-35 154.1 192 42.7
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 5.3e-35 152.5 366 33.1
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 6.9e-35 152.1 273 37.0
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.3e-33 147.9 273 36.6
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 2.2e-33 147.1 300 35.0
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 4.2e-32 142.9 368 32.6
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 1.6e-31 141.0 320 32.2
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 4.7e-31 139.4 347 33.1
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.3e-30 137.1 355 31.3
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 3.3e-29 133.3 217 38.7
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 9.7e-29 131.7 372 30.4
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 9.7e-29 131.7 222 36.5
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 1.3e-28 131.3 203 41.4
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 1.7e-28 131.0 325 31.1
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.7e-28 131.0 199 40.7
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.2e-28 130.6 197 40.1
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 3.7e-28 129.8 342 32.5
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 1.1e-27 128.3 202 42.1
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.1e-27 128.3 203 38.4
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 7.0e-27 125.6 222 30.2
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.2e-26 124.8 157 45.2
Actinidia33130 Actinidia chinensis HOM05D002925 ORTHO05D003247 2.6e-26 123.6 189 37.0
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 3.4e-26 123.2 220 36.4
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 7.7e-26 122.1 196 33.2
TPR.G14997 Trifolium pratense HOM05D002925 ORTHO05D003247 7.7e-26 122.1 203 38.9
CAN.G193.33 Capsicum annuum HOM05D002925 ORTHO05D000105 1.0e-25 121.7 202 38.6
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 2.9e-25 120.2 194 38.1
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 2.9e-25 120.2 203 38.9
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 1.4e-24 117.9 185 35.7
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 1.9e-24 117.5 195 34.9
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.5e-24 117.1 191 33.5
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 4.2e-24 116.3 194 36.6
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 9.4e-24 115.2 188 31.9
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 2.7e-23 113.6 188 32.4
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 3.6e-23 113.2 218 34.4
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 4.7e-23 112.8 147 42.9
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 8.0e-23 112.1 196 37.2
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.4e-22 111.3 194 30.4
Thecc.08G105500 Theobroma cacao HOM05D002925 ORTHO05D003247 1.4e-22 111.3 191 36.6
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 1.8e-22 110.9 193 32.6
RcHm_v2.0_Chr6g0271781 Rosa chinensis HOM05D002925 ORTHO05D003247 3.0e-22 110.2 99 53.5
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.9e-22 109.8 188 31.4
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 6.7e-22 109.0 210 33.3
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 6.7e-22 109.0 372 28.5
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 2.0e-21 107.5 139 41.0
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 2.6e-21 107.1 210 32.9
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 2.6e-21 107.1 211 32.2
RcHm_v2.0_Chr7g0243961 Rosa chinensis HOM05D002925 ORTHO05D003247 2.6e-21 107.1 211 32.2
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 5.7e-21 105.9 145 40.0
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 7.4e-21 105.5 187 31.0
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.3e-20 104.8 210 32.4
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.2e-20 104.0 210 31.9
Dinv09024 Davidia involucrata HOM05D002925 ORTHO05D003247 2.8e-20 103.6 72 70.8
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 8.2e-20 102.1 335 27.5
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 7.0e-19 99.0 158 34.8
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 1.2e-18 98.2 211 34.1
Dinv09023 Davidia involucrata HOM05D002925 ORTHO05D003247 5.9e-18 95.9 72 66.7
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 1.7e-17 94.4 193 33.2
MD15G1370800 Malus domestica HOM05D002925 ORTHO05D003247 2.2e-17 94.0 153 38.6
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 3.8e-17 93.2 193 32.6
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 6.5e-17 92.4 285 31.2
ATR0782G041 Amborella trichopoda HOM05D002925 ORTHO05D003247 8.5e-17 92.0 91 50.5
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 8.5e-17 92.0 210 31.0
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 8.5e-17 92.0 253 27.3
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 8.5e-17 92.0 253 27.3
Potri.002G097700 Populus trichocarpa HOM05D002925 ORTHO05D003247 5.5e-16 89.4 288 27.1
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 7.2e-16 89.0 254 31.5
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 7.2e-16 89.0 197 29.9
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 4.7e-15 86.3 168 33.3
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 6.1e-15 85.9 182 31.9
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 3.0e-14 83.6 204 32.8
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 1.5e-13 81.3 147 34.7
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 3.3e-13 80.1 231 26.0
PSO210G0747 Papaver somniferum HOM05D002925 ORTHO05D003247 4.4e-13 79.7 114 38.6
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 9.7e-13 78.6 215 29.8
ECA232G4158 Erigeron canadensis HOM05D002925 ORTHO05D003247 3.7e-12 76.6 159 30.2
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 3.7e-12 76.6 177 32.2
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.4e-11 74.7 209 29.7
Actinidia29592 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.1e-11 73.6 159 33.3
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.2e-10 71.6 248 27.8
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 3.5e-10 70.1 205 27.8
Duzib041G0802 Durio zibethinus HOM05D002925 ORTHO05D003247 4.5e-10 69.7 156 33.3
Os09g0473300 Oryza sativa ssp. japonica HOM05D036816 ORTHO05D003247 2.2e-09 67.4 168 28.0
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 3.8e-09 66.6 190 28.4
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 5.0e-09 66.2 251 24.7
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 6.5e-09 65.9 153 28.1
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 6.5e-09 65.9 209 28.7
ECA236G2475 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.9e-08 64.3 105 38.1
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 9.4e-08 62.0 176 30.1
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 9.4e-08 62.0 161 28.6
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 1.0e-06 58.5 177 32.2
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 3.0e-06 57.0 49 46.9
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 6.8e-06 55.8 90 32.2


User provided reference genes

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