Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.7e-94 348.6 167 100.0
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 9.9e-73 276.9 162 87.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 2.9e-64 248.8 163 76.7
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 4.6e-62 241.5 162 74.1
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 6.0e-62 241.1 167 71.3
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.0e-61 240.4 152 77.0
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.3e-61 240.0 152 77.0
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 2.5e-60 235.7 152 75.7
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 2.8e-59 232.3 152 73.7
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 6.2e-59 231.1 152 73.7
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 6.2e-59 231.1 152 73.7
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.8e-58 229.6 158 71.5
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.8e-58 229.6 152 73.0
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 2.4e-58 229.2 152 73.0
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 3.1e-58 228.8 152 71.7
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.2e-57 226.9 152 72.4
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 1.5e-57 226.5 152 70.4
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 4.5e-57 224.9 158 70.3
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 5.8e-57 224.6 162 69.1
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 7.6e-57 224.2 152 69.7
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 9.9e-57 223.8 152 69.7
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 9.9e-57 223.8 152 69.7
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.3e-56 223.4 152 71.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.3e-56 223.4 154 67.5
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 1.3e-56 223.4 163 67.5
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.7e-56 223.0 152 69.1
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.9e-56 222.2 152 70.4
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 3.8e-56 221.9 197 60.4
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.9e-56 221.5 152 68.4
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 6.4e-56 221.1 152 69.1
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.4e-56 221.1 162 69.1
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 3.2e-55 218.8 152 68.4
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 3.2e-55 218.8 152 71.1
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.1e-55 217.6 152 67.8
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 7.1e-55 217.6 152 65.1
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 9.3e-55 217.2 166 64.5
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.2e-54 216.9 152 69.1
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 2.1e-54 216.1 166 65.1
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 4.6e-54 214.9 166 63.3
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 6.0e-54 214.5 151 68.2
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 1.0e-53 213.8 166 63.3
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.8e-53 213.0 146 68.5
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.8e-53 213.0 152 68.4
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.0e-53 212.2 162 66.7
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.1e-53 211.5 154 64.3
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 8.7e-53 210.7 165 63.0
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 8.7e-53 210.7 155 67.7
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.9e-52 209.5 153 68.0
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 4.3e-52 208.4 166 61.4
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 9.6e-52 207.2 152 65.1
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 2.8e-51 205.7 154 63.6
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 4.8e-51 204.9 162 61.1
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 4.8e-51 204.9 161 63.4
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-50 203.8 154 64.3
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.1e-50 203.8 152 63.8
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 1.1e-50 203.8 154 63.6
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.8e-50 203.0 152 64.5
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.8e-50 203.0 154 63.0
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 3.1e-50 202.2 151 66.2
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 6.9e-50 201.1 152 64.5
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 9.0e-50 200.7 154 63.6
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-49 200.3 154 63.0
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-49 200.3 154 63.0
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.2e-49 200.3 154 63.6
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.5e-49 199.9 154 63.6
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.5e-49 199.9 162 64.8
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-49 199.5 154 63.0
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 2.6e-49 199.1 154 63.0
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-49 199.1 154 63.0
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 3.4e-49 198.7 162 62.3
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 7.6e-49 197.6 152 63.2
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 7.6e-49 197.6 161 62.1
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 7.6e-49 197.6 154 63.6
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-48 196.8 161 61.5
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.7e-48 196.4 152 62.5
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.7e-48 196.4 162 59.3
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.2e-48 196.1 162 59.3
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.2e-48 196.1 162 58.6
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.2e-48 196.1 162 58.6
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 2.9e-48 195.7 152 62.5
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.9e-48 195.7 154 63.0
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.8e-48 195.3 154 62.3
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 4.9e-48 194.9 152 61.8
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.9e-48 194.9 154 61.0
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 6.5e-48 194.5 161 60.2
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 6.5e-48 194.5 150 62.7
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 6.5e-48 194.5 157 60.5
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 8.4e-48 194.1 154 61.7
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 8.4e-48 194.1 164 56.7
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 8.4e-48 194.1 168 57.1
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.1e-47 193.7 162 58.0
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.2e-47 192.2 154 59.7
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 3.2e-47 192.2 159 60.4
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 3.2e-47 192.2 154 62.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 4.2e-47 191.8 154 59.7
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 5.5e-47 191.4 162 59.3
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 9.3e-47 190.7 152 59.9
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.2e-46 190.3 162 57.4
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-46 189.9 162 58.0
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-46 189.9 162 58.0
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-46 189.9 162 58.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 1.6e-46 189.9 161 58.4
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 2.7e-46 189.1 162 58.6
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 4.6e-46 188.3 154 58.4
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 6.0e-46 188.0 161 59.6
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.9e-46 187.6 162 56.2
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-45 187.2 162 58.0
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 8.7e-45 184.1 163 55.8
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.9e-44 183.0 161 57.8
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 4.3e-44 181.8 155 59.4
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.3e-44 181.8 162 53.7
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 7.4e-44 181.0 146 58.9
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.2e-43 179.5 162 53.7
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 4.8e-43 178.3 131 65.6
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.4e-42 176.8 123 66.7
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.1e-42 175.6 152 57.9
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 6.9e-42 174.5 152 58.6
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-40 170.2 163 56.4
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-40 169.9 163 53.4
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 5.0e-40 168.3 144 59.0
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 5.0e-40 168.3 145 58.6
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-39 167.2 163 51.5
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-39 167.2 163 51.5
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-39 167.2 163 51.5
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-39 166.8 163 52.1
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.4e-39 166.8 163 52.1
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 8.8e-37 157.5 160 50.0
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 2.5e-36 156.0 112 67.9
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 3.3e-36 155.6 111 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 1.3e-35 153.7 152 49.3
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-34 150.6 159 48.4
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.1e-34 150.6 152 54.6
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.1e-34 149.1 121 59.5
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.2e-33 147.1 153 49.0
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-33 146.4 152 51.3
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 8.5e-32 141.0 154 46.1
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.1e-30 136.3 100 65.0
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.7e-30 135.2 116 60.3
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 9.7e-28 127.5 139 46.0
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.4e-26 122.9 163 46.0
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-24 117.5 94 61.7
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 2.2e-24 116.3 152 43.4
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.0e-24 115.2 110 53.6
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.4e-21 107.1 151 39.7
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-21 107.1 151 39.7
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-21 106.7 151 39.7
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 3.0e-21 105.9 75 62.7
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 2.2e-19 99.8 74 60.8
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 2.0e-17 93.2 148 37.2
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 7.7e-17 91.3 140 35.0
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.0e-16 90.9 77 57.1
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.9e-15 86.7 69 60.9
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 6.7e-13 78.2 152 33.6
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 8.8e-13 77.8 151 34.4
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 1.1e-10 70.9 42 69.0
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.1e-10 70.9 151 34.4
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-10 70.5 153 30.7
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-10 70.5 153 30.7
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 8.5e-08 61.2 45 55.6
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 1.1e-07 60.8 174 30.5


User provided reference genes

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