Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 0.0e+00 1243.4 637 100.0
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.4e-268 929.5 661 76.4
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.5e-249 865.5 642 72.9
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.4e-244 849.0 654 71.7
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.6e-219 765.0 645 64.5
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.0e-218 763.8 644 65.4
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.9e-212 743.0 646 62.8
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.8e-208 729.2 380 98.4
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 5.8e-206 721.5 644 62.1
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.1e-203 713.0 646 61.6
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.6e-203 711.8 509 75.4
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.5e-198 696.8 644 59.0
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.2e-197 693.0 646 61.5
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 6.0e-195 684.9 646 59.1
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 3.0e-194 682.6 644 60.4
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 3.9e-194 682.2 646 60.1
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 6.6e-194 681.4 643 56.9
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.5e-193 680.2 644 57.6
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.9e-193 679.9 643 58.0
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.6e-192 676.8 644 58.1
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 4.8e-192 675.2 647 60.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 3.1e-191 672.5 646 58.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.2e-189 666.4 651 56.5
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 2.9e-189 666.0 694 55.8
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 4.9e-189 665.2 646 56.3
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.5e-185 652.9 706 55.1
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 7.4e-185 651.4 644 56.5
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 7.4e-185 651.4 644 59.5
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.2e-184 648.3 644 57.0
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.1e-183 646.0 645 57.4
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 4.5e-182 642.1 644 57.1
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.7e-181 640.2 644 56.5
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.4e-180 637.1 649 55.9
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 4.2e-180 635.6 673 54.5
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 7.1e-180 634.8 652 55.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.6e-179 633.6 642 55.5
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.3e-178 629.8 642 55.1
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.0e-178 629.4 642 55.3
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 2.5e-177 626.3 647 56.9
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 7.4e-177 624.8 645 55.8
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 6.2e-176 621.7 642 55.1
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.5e-174 617.1 650 54.5
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 2.0e-174 616.7 638 55.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.4e-172 610.5 639 55.2
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 1.9e-172 610.1 651 53.9
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.5e-171 605.9 647 54.4
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.0e-170 602.8 647 53.8
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.8e-168 596.3 645 52.9
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 4.8e-168 595.5 641 54.9
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.4e-167 594.0 643 54.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 4.1e-167 592.4 644 53.4
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 5.3e-167 592.0 645 52.6
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-166 589.7 646 55.0
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.9e-165 586.3 663 51.7
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 6.5e-165 585.1 651 53.8
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 8.5e-165 584.7 646 54.2
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.5e-164 583.2 646 54.0
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 3.2e-164 582.8 644 52.2
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 7.2e-164 581.6 653 53.0
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 7.9e-163 578.2 646 53.4
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.4e-162 577.4 640 55.2
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 8.8e-162 574.7 644 53.3
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-161 574.3 679 50.1
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-161 574.3 638 53.3
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.5e-161 573.2 646 53.3
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 9.7e-161 571.2 636 53.0
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 4.8e-160 568.9 641 53.0
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 4.8e-160 568.9 650 52.5
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 4.8e-160 568.9 653 50.7
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.1e-159 567.8 416 72.6
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.1e-159 567.8 641 53.0
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.4e-159 567.4 653 53.1
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 1.4e-159 567.4 640 51.7
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 3.1e-159 566.2 640 52.2
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.2e-158 564.3 645 52.6
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 2.0e-158 563.5 653 50.7
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.5e-158 562.4 638 52.5
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.0e-157 561.2 644 51.6
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 3.2e-156 556.2 645 51.2
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.6e-155 553.9 645 51.6
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.6e-155 552.7 640 50.2
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.0e-154 551.2 643 51.3
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.4e-154 550.8 669 50.5
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.0e-154 549.7 646 50.9
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 3.9e-154 549.3 655 49.8
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.7e-152 543.9 669 50.2
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 2.2e-152 543.5 645 49.6
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 8.2e-152 541.6 624 50.3
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 8.2e-152 541.6 645 50.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.1e-151 539.7 646 49.5
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.6e-150 536.6 512 59.4
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.5e-150 535.8 644 50.5
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 3.8e-149 532.7 645 50.1
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 3.2e-148 529.6 643 50.1
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.0e-146 524.6 640 49.1
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-146 524.2 659 48.3
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 3.9e-146 522.7 616 49.8
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 5.2e-146 522.3 643 48.7
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 5.7e-145 518.8 621 48.8
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 5.7e-145 518.8 620 49.0
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.4e-143 514.2 613 49.8
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 3.1e-143 513.1 665 47.5
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.1e-143 513.1 641 47.4
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 5.3e-143 512.3 643 47.4
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 9.1e-143 511.5 643 48.1
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-142 511.1 649 47.9
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 5.9e-142 508.8 641 47.1
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 8.5e-141 505.0 658 47.4
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.1e-140 504.6 618 47.7
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 4.7e-139 499.2 570 52.1
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 6.1e-139 498.8 618 50.3
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.6e-137 493.4 656 46.5
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 4.4e-137 492.7 640 47.7
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 5.7e-137 492.3 639 47.1
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 5.7e-137 492.3 398 64.6
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.2e-136 490.3 639 47.4
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 4.1e-135 486.1 639 46.5
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 8.5e-133 478.4 611 47.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 8.5e-133 478.4 611 47.5
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-129 468.0 611 47.0
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 2.0e-129 467.2 611 46.8
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.3e-128 462.2 623 45.7
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.0e-122 444.9 646 46.4
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 7.0e-119 432.2 588 47.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 6.6e-117 425.6 556 47.8
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 9.5e-116 421.8 642 43.3
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.1e-115 420.6 391 62.9
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 4.7e-115 419.5 508 50.4
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.0e-113 414.1 644 42.1
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.9e-112 410.2 383 60.3
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.1e-111 408.3 256 81.6
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 7.8e-110 402.1 335 64.2
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-95 355.1 326 58.6
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 8.1e-91 339.0 623 39.2
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.5e-84 318.2 256 70.7
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 9.0e-82 308.9 404 47.5
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.5e-78 297.0 694 33.6
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.7e-77 292.4 423 45.4
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.3e-76 290.4 176 86.9
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.0e-74 282.3 328 49.4
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 6.7e-69 266.2 263 57.0
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 8.1e-67 259.2 595 33.3
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.1e-66 258.8 253 61.7
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.4e-65 253.8 589 33.4
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.8e-64 250.4 549 36.1
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 3.2e-63 247.3 238 55.0
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 3.5e-62 243.8 661 31.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 6.0e-62 243.0 244 52.5
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.0e-61 242.3 264 55.3
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 8.7e-61 239.2 363 39.9
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 9.6e-60 235.7 207 60.4
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.9e-48 197.6 231 49.4
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.6e-46 190.7 220 48.2
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.5e-44 185.3 207 56.0
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 5.9e-41 173.3 262 46.2
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 5.0e-40 170.2 280 41.8
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 3.2e-39 167.5 266 42.9
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 7.9e-38 162.9 285 39.6
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 9.1e-34 149.4 458 29.9
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.7e-33 146.4 95 76.8
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.7e-30 137.1 154 48.1
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.1e-26 124.0 178 44.4
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 7.0e-26 123.2 186 43.5
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 8.8e-21 106.3 243 35.0
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.9e-17 93.6 47 93.6
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 8.5e-16 89.7 154 42.2
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.1e-15 89.4 95 50.5
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.2e-15 87.4 84 51.2
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 2.1e-14 85.1 89 53.9
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.7e-14 84.0 74 56.8
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.3e-11 75.9 106 49.1
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 4.9e-11 73.9 263 27.4
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.9e-08 64.7 90 45.6
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.9e-07 62.0 127 35.4
vmacro03875 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 1.9e-07 62.0 105 39.0
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 6.1e-06 57.0 38 71.1


User provided reference genes

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