Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.5e-181 639.4 326 100.0
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.2e-152 540.8 326 83.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 2.1e-151 539.3 333 84.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 7.9e-151 537.3 328 83.8
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 8.8e-150 533.9 330 84.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 1.6e-138 496.5 325 78.8
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.7e-135 485.7 322 76.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 6.7e-134 481.1 324 75.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.2e-132 476.1 321 73.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 4.8e-132 474.9 324 73.5
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 5.3e-131 471.5 324 72.8
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 5.9e-130 468.0 308 75.6
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 7.7e-130 467.6 308 74.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.7e-129 466.5 310 74.8
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 2.9e-129 465.7 320 72.5
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 3.8e-129 465.3 324 72.2
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.9e-128 463.0 324 73.8
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.5e-128 461.5 308 76.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 7.2e-128 461.1 324 71.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.6e-127 459.9 324 71.9
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.1e-127 459.5 307 76.5
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.1e-127 459.5 320 72.5
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 4.0e-126 455.3 322 71.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.6e-125 452.6 308 74.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.6e-125 452.6 325 70.2
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.4e-125 452.2 319 72.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.4e-125 451.8 325 67.4
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 4.4e-125 451.8 312 73.1
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.4e-125 451.8 307 74.9
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 2.2e-124 449.5 326 69.0
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.8e-124 449.1 322 70.2
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.8e-124 448.4 304 73.7
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 8.3e-124 447.6 320 70.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.4e-123 446.0 320 71.9
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.4e-123 446.0 322 71.7
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 5.4e-123 444.9 304 73.0
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 9.1e-123 444.1 349 67.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.2e-122 443.7 322 68.9
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.7e-122 442.6 320 70.0
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.0e-121 440.7 307 71.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.3e-121 440.3 326 69.0
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.3e-121 439.5 308 72.1
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 6.5e-121 438.0 320 71.2
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.6e-121 437.6 351 66.4
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-120 437.2 322 68.3
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.1e-120 437.2 317 71.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.1e-120 437.2 322 69.3
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.9e-120 436.4 322 69.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.2e-119 433.7 322 66.8
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.8e-119 432.6 309 68.9
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.8e-119 432.6 322 66.8
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 4.7e-119 431.8 322 68.3
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 6.1e-119 431.4 350 65.4
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.8e-118 429.9 321 67.9
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 2.3e-118 429.5 331 64.7
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 5.2e-118 428.3 320 69.1
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.8e-118 427.9 321 67.6
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-117 427.2 326 69.6
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.2e-117 427.2 322 68.9
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-117 427.2 345 65.5
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.2e-117 427.2 316 67.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.5e-117 426.8 322 66.8
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.5e-117 426.8 330 67.3
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.0e-117 426.4 322 68.3
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.0e-117 426.4 322 66.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 7.5e-117 424.5 321 66.4
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 9.8e-117 424.1 329 65.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.7e-116 423.3 321 67.9
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.2e-116 422.9 350 65.4
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.8e-116 422.5 326 64.4
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.3e-116 421.0 394 58.6
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-115 420.6 322 68.0
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.4e-115 420.2 314 65.6
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.1e-115 419.1 323 66.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 3.1e-115 419.1 305 69.8
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 5.4e-115 418.3 314 66.2
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.2e-114 417.2 321 66.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.7e-114 416.0 282 75.5
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 3.5e-114 415.6 321 65.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 5.9e-114 414.8 316 67.7
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 7.8e-114 414.5 314 65.6
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-113 414.1 366 60.7
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 3.3e-112 409.1 306 68.3
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.6e-111 405.6 273 74.0
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 4.7e-111 405.2 277 75.1
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.7e-111 405.2 356 59.0
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.4e-110 403.7 306 67.3
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-110 402.9 283 71.4
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.0e-110 402.1 308 67.5
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 8.9e-110 401.0 306 66.0
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-109 400.6 266 74.8
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 4.4e-109 398.7 275 72.7
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-108 396.7 325 64.9
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 4.9e-108 395.2 306 66.3
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 2.4e-107 392.9 306 66.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 7.0e-107 391.3 306 66.0
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.7e-106 389.4 289 68.2
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 3.5e-106 389.0 318 64.5
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 3.5e-106 389.0 267 72.3
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.8e-106 387.9 306 65.4
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.0e-105 387.5 306 65.7
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.3e-105 387.1 311 64.0
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 1.5e-104 383.6 311 64.0
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.9e-104 383.3 266 72.2
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.3e-104 382.5 306 64.1
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 3.6e-103 379.0 308 66.6
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 4.7e-103 378.6 311 63.0
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.1e-102 377.5 337 60.2
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.2e-101 374.0 324 60.2
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.0e-101 373.2 302 60.9
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.4e-101 372.5 247 72.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.4e-101 372.1 321 60.7
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.4e-101 372.1 308 61.4
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.8e-101 371.7 302 61.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 7.5e-101 371.3 325 61.2
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 2.2e-100 369.8 253 70.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 9.2e-99 364.4 301 60.8
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.6e-98 362.1 311 60.5
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.6e-97 358.2 332 57.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 6.6e-97 358.2 307 60.9
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 3.6e-95 352.4 309 58.9
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-91 340.5 322 57.1
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.8e-87 326.2 308 58.1
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.1e-86 322.8 229 71.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 8.1e-79 298.1 230 63.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.2e-77 294.3 308 52.3
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.1e-75 287.7 462 41.8
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.0e-73 281.2 203 68.5
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 9.6e-72 274.6 306 51.6
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.3e-68 264.2 211 67.8
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.7e-68 263.8 178 74.2
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.9e-68 263.1 169 79.3
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.9e-65 252.7 188 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.6e-61 240.0 197 59.9
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.4e-61 239.6 268 53.4
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 7.6e-61 238.4 156 72.4
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.1e-59 231.9 184 65.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.1e-59 231.9 352 41.5
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.1e-58 230.3 248 53.2
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.3e-57 227.6 169 71.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 2.3e-57 226.9 307 46.3
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.3e-57 226.9 212 59.4
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.3e-55 221.1 174 66.7
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.8e-55 219.9 221 51.1
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 6.9e-54 215.3 179 67.0
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.6e-53 213.4 146 72.6
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-51 208.0 217 53.0
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 7.1e-51 205.3 290 42.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 9.3e-51 204.9 140 74.3
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-50 204.5 196 58.2
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.3e-49 200.3 132 75.8
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 5.0e-44 182.6 136 65.4
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.1e-42 177.2 333 41.1
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.7e-41 172.2 149 61.1
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 6.3e-39 165.6 118 66.9
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 2.4e-38 163.7 117 66.7
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 5.3e-38 162.5 182 45.1
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.6e-34 151.0 106 72.6
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.1e-34 149.1 177 48.0
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-28 130.6 137 54.7
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.5e-27 127.1 114 59.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.1e-26 122.5 129 49.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 6.7e-25 119.0 132 55.3
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 6.1e-18 95.9 83 60.2
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-17 95.1 66 69.7
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 9.7e-16 88.6 83 57.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.8e-15 87.0 85 58.8
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-13 81.3 65 64.6
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 4.5e-13 79.7 85 50.6
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.3e-12 78.2 44 86.4
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-12 77.8 65 64.6
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-11 74.3 49 67.3
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 8.3e-07 58.9 53 58.5
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 1.4e-06 58.2 36 75.0
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 9.1e-06 55.5 40 67.5


User provided reference genes

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