Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.1e-77 292.4 152 100.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.0e-76 288.5 152 98.7
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 7.2e-54 214.2 153 70.6
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.3e-47 193.4 155 61.9
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.2e-47 192.6 150 72.7
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.5e-46 189.1 150 72.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-45 186.8 154 70.1
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-45 186.8 154 70.1
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-45 186.8 154 70.1
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 5.2e-44 181.4 151 60.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.7e-43 177.9 151 65.6
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 7.4e-43 177.6 149 59.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.3e-42 176.8 153 66.0
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.7e-42 176.4 156 60.9
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.7e-42 176.4 163 56.4
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.2e-42 176.0 147 69.4
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 3.7e-42 175.3 153 68.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 6.3e-42 174.5 163 64.4
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.4e-41 173.3 156 60.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.8e-41 172.9 164 56.7
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 5.3e-41 171.4 163 55.2
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 7.0e-41 171.0 163 55.2
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.1e-41 170.6 165 63.6
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.6e-40 169.9 164 57.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.6e-40 169.9 153 57.5
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.5e-40 168.7 161 62.7
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.5e-40 168.7 150 65.3
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 7.7e-40 167.5 163 61.3
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.7e-39 166.4 142 60.6
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.9e-39 165.6 147 59.2
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 3.8e-39 165.2 163 60.7
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 5.0e-39 164.9 153 58.8
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-38 163.7 154 55.2
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.5e-38 163.3 150 55.3
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.5e-38 163.3 151 63.6
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-38 162.5 154 56.5
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.5e-38 162.5 157 56.7
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.5e-38 162.5 162 60.5
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.5e-38 162.5 141 59.6
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.5e-38 162.5 163 54.0
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 3.2e-38 162.2 154 57.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.2e-38 162.2 162 63.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.2e-38 162.2 154 55.8
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.2e-38 161.8 157 56.1
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.2e-38 161.8 157 56.1
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 5.5e-38 161.4 93 78.5
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 9.4e-38 160.6 147 62.6
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 9.4e-38 160.6 157 56.7
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.1e-37 159.5 135 61.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.1e-37 159.5 152 54.6
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.1e-37 159.5 155 56.8
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.7e-37 159.1 161 58.4
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.7e-37 159.1 162 60.5
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.7e-37 159.1 162 57.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.6e-37 158.7 153 54.2
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 3.6e-37 158.7 150 54.7
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 6.1e-37 157.9 157 56.1
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.1e-37 157.9 138 57.2
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 8.0e-37 157.5 145 54.5
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 8.0e-37 157.5 155 54.8
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.0e-36 157.1 145 58.6
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.4e-36 156.8 153 52.9
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.3e-36 156.0 144 55.6
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 2.3e-36 156.0 141 59.6
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 4.0e-36 155.2 155 52.9
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 6.7e-36 154.5 142 61.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.7e-36 154.5 166 60.8
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 6.7e-36 154.5 160 52.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 8.8e-36 154.1 163 58.3
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.2e-35 153.7 149 60.4
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.5e-35 153.3 152 55.9
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-35 152.9 143 53.8
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.4e-35 151.8 136 64.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 5.7e-35 151.4 143 62.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 5.7e-35 151.4 161 58.4
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 5.7e-35 151.4 134 64.9
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 9.7e-35 150.6 157 58.6
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.3e-34 150.2 142 59.2
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.3e-34 150.2 166 54.2
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.8e-34 149.1 147 52.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.7e-34 148.7 128 59.4
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 3.7e-34 148.7 128 56.2
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 4.8e-34 148.3 143 58.0
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 8.2e-34 147.5 120 68.3
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 8.2e-34 147.5 120 68.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.2e-34 147.5 145 60.0
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.1e-33 147.1 83 75.9
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 105 68.6
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.8e-33 146.4 153 52.3
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.8e-33 146.4 133 62.4
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.4e-33 146.0 96 71.9
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.1e-33 145.6 143 60.8
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 5.3e-33 144.8 145 61.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 9.1e-33 144.1 142 60.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.2e-32 143.7 162 56.2
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.6e-32 143.3 143 54.5
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 2.0e-32 142.9 85 75.3
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.0e-32 142.9 145 59.3
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 2.0e-32 142.9 142 62.7
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.7e-32 142.5 154 59.1
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.9e-32 141.4 148 52.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.0e-31 140.6 131 53.4
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 2.2e-31 139.4 123 64.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.2e-31 139.4 145 58.6
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.2e-31 139.4 144 59.0
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 6.5e-31 137.9 91 67.0
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 8.5e-31 137.5 150 50.0
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 5.5e-30 134.8 150 56.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.2e-30 134.4 141 61.0
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 9.4e-30 134.0 153 57.5
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.2e-29 133.7 169 47.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 6.1e-29 131.3 150 58.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 5.2e-28 128.3 158 50.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 4.4e-27 125.2 135 59.3
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 7.5e-27 124.4 119 64.7
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.7e-26 123.2 113 65.5
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.4e-25 120.2 167 46.1
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.4e-25 119.4 89 62.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-24 116.7 155 48.4
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 3.5e-24 115.5 140 44.3
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 5.9e-24 114.8 101 54.5
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.3e-23 113.6 113 59.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 3.8e-23 112.1 155 43.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 8.5e-23 110.9 169 42.0
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 5.5e-22 108.2 75 68.0
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.2e-21 107.1 54 77.8
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 9.8e-19 97.4 86 58.1
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.3e-18 94.7 144 43.8
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.1e-17 94.0 76 55.3
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 7.0e-17 91.3 75 49.3
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.6e-16 90.1 112 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.6e-16 90.1 74 52.7
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 5.9e-16 88.2 163 45.4
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 3.3e-14 82.4 86 61.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 9.5e-14 80.9 103 54.4
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.8e-13 79.3 79 57.0
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.7e-13 78.6 135 35.6
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.5e-11 73.6 78 42.3
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.3e-07 60.5 40 60.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 5.0e-07 58.5 48 52.1
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-06 56.2 46 58.7
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-06 55.5 45 60.0
MCO15G631 Micromonas commoda HOM05D005372 ORTHO05D006593 5.6e-06 55.1 101 31.7


User provided reference genes

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