Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037053 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006340 6.1e-38 160.2 75 100.0
CSS0048842 Camellia sinensis var. sinensis HOM05D149384 ORTHO05D112521 2.9e-16 88.2 81 61.7
CSS0029316 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006340 1.4e-13 79.3 38 97.4
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 8.8e-13 76.6 38 92.1
SEGI_26862 Sequoiadendron giganteum HOM05D000371 ORTHO05D006340 8.8e-13 76.6 39 87.2
Actinidia01164 Actinidia chinensis HOM05D000371 ORTHO05D006340 1.2e-12 76.3 38 89.5
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.2e-12 76.3 38 92.1
Psat1g215120 Pisum sativum HOM05D000371 ORTHO05D006340 1.2e-12 76.3 44 81.8
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 1.2e-12 76.3 38 92.1
arahy.Tifrunner.gnm1.ann1.ASG1PZ Arachis hypogaea HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
Haze_04579 Corylus avellana HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
FvH4_2g11800 Fragaria vesca HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
FAN15G0960 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
FAN20G0951 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
Lj6g0013164 Lotus japonicus HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
RcHm_v2.0_Chr6g0249601 Rosa chinensis HOM05D000371 ORTHO05D006340 1.5e-12 75.9 38 92.1
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.6e-12 75.1 38 89.5
Glyma.13G258500 Glycine max HOM05D000371 ORTHO05D006340 2.6e-12 75.1 38 89.5
Glyma.15G056800 Glycine max HOM05D000371 ORTHO05D006340 2.6e-12 75.1 38 89.5
Sed0013666 Sechium edule HOM05D000371 ORTHO05D006340 2.6e-12 75.1 39 89.7
Actinidia00294 Actinidia chinensis HOM05D000371 ORTHO05D006340 3.4e-12 74.7 49 67.3
Cfa005697 Carpinus fangiana HOM05D000371 ORTHO05D006340 3.4e-12 74.7 38 89.5
SGA_v2.0_scaffold14G07147 Striga asiatica HOM05D000371 ORTHO05D006340 3.4e-12 74.7 38 89.5
TPR.G9488 Trifolium pratense HOM05D000371 ORTHO05D006340 3.4e-12 74.7 38 86.8
C03p61940 Brassica napus HOM05D000371 ORTHO05D006340 4.4e-12 74.3 49 69.4
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 4.4e-12 74.3 38 89.5
ClCG09G015820 Citrullus lanatus HOM05D000371 ORTHO05D006340 4.4e-12 74.3 38 89.5
Manes.07G036800 Manihot esculenta HOM05D000371 ORTHO05D006340 4.4e-12 74.3 38 86.8
Dinv15989 Davidia involucrata HOM05D000371 ORTHO05D006340 5.7e-12 73.9 38 86.8
Ciclev10006261m.g Citrus clementina HOM05D000371 ORTHO05D006340 7.5e-12 73.6 38 86.8
ECA232G0442 Erigeron canadensis HOM05D000371 ORTHO05D006340 7.5e-12 73.6 38 86.8
Lsat_1_v5_gn_9_41400 Lactuca sativa HOM05D000371 ORTHO05D006340 7.5e-12 73.6 38 86.8
Lalb_Chr18g0060451 Lupinus albus HOM05D000371 ORTHO05D006340 7.5e-12 73.6 38 86.8
QL11p023863 Quercus lobata HOM05D000371 ORTHO05D006340 7.5e-12 73.6 38 86.8
GSVIVG01015733001 Vitis vinifera HOM05D000371 ORTHO05D006340 7.5e-12 73.6 38 86.8
CiPaw.05G030900 Carya illinoinensis HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
MELO3C018596.2 Cucumis melo HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
CsaV3_7G006970 Cucumis sativus L. HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
FAN21G0724 Fragaria x ananassa HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
Hma1.2p1_1093F.1_g256100 Hydrangea macrophylla HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 84.2
Nn1g05528 Nelumbo nucifera HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 84.2
Phvul.006G203300 Phaseolus vulgaris HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
Potri.007G113100 Populus trichocarpa HOM05D000371 ORTHO05D006340 9.7e-12 73.2 38 86.8
Aqoxy1G01043 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 1.3e-11 72.8 38 84.2
arahy.Tifrunner.gnm1.ann1.WN06RC Arachis hypogaea HOM05D000371 ORTHO05D006340 1.3e-11 72.8 38 89.5
MSTRG.5277 Avicennia marina HOM05D000371 ORTHO05D006340 1.3e-11 72.8 38 86.8
Ca_00157_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006340 1.3e-11 72.8 38 84.2
Medtr2g009390 Medicago truncatula HOM05D000371 ORTHO05D006340 1.3e-11 72.8 38 84.2
SGA_v2.0_scaffold83G26354 Striga asiatica HOM05D000371 ORTHO05D006340 1.3e-11 72.8 38 86.8
TAR625G1317 Trochodendron aralioides HOM05D000371 ORTHO05D006340 1.3e-11 72.8 38 84.2
COL.COLO4_32358 Corchorus olitorius HOM05D000371 ORTHO05D006340 1.7e-11 72.4 38 84.2
Eucgr.I02629 Eucalyptus grandis HOM05D000371 ORTHO05D006340 1.7e-11 72.4 38 84.2
MBI02_g19395_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006340 1.7e-11 72.4 38 86.8
TAR381G1119 Trochodendron aralioides HOM05D000371 ORTHO05D006340 1.7e-11 72.4 38 84.2
VMungo0540G0136 Vigna mungo HOM05D000371 ORTHO05D006340 1.7e-11 72.4 38 84.2
A06p31020 Brassica napus HOM05D000371 ORTHO05D006340 2.2e-11 72.0 38 78.9
BraA06t26044Z Brassica rapa HOM05D000371 ORTHO05D006340 2.2e-11 72.0 38 78.9
CANSAT11G2503 Cannabis sativa HOM05D000371 ORTHO05D006340 2.2e-11 72.0 38 86.8
RhsimUnG0008400 Rhododendron simsii HOM05D000371 ORTHO05D006340 2.2e-11 72.0 37 86.5
RhsimUnG0106200 Rhododendron simsii HOM05D000371 ORTHO05D006340 2.2e-11 72.0 37 86.5
Thecc.02G131800 Theobroma cacao HOM05D000371 ORTHO05D006340 2.2e-11 72.0 38 84.2
ATR0022G017 Amborella trichopoda HOM05D000371 ORTHO05D006340 2.8e-11 71.6 37 86.5
Sed0020537 Sechium edule HOM05D000371 ORTHO05D006340 2.8e-11 71.6 38 84.2
MSTRG.27813 Avicennia marina HOM05D000371 ORTHO05D006340 3.7e-11 71.2 38 84.2
Solyc01g105710.3 Solanum lycopersicum HOM05D000371 ORTHO05D006340 3.7e-11 71.2 37 86.5
Sopen01g048150 Solanum pennellii HOM05D000371 ORTHO05D006340 3.7e-11 71.2 37 86.5
PGSC0003DMG400033579 Solanum tuberosum HOM05D000371 ORTHO05D006340 3.7e-11 71.2 37 86.5
Atru.BG.32.p Acer truncatum HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 81.6
BcaC04g23321 Brassica carinata HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
A09p08640 Brassica napus HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
BolC3t18453H Brassica oleracea HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
BraA09t36513Z Brassica rapa HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
CARHR278290 Cardamine hirsuta HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
Duzib132G1081 Durio zibethinus HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 81.6
Thhalv10005167m.g Eutrema salsugineum HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
Sp2g27420 Schrenkiella parvula HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 78.9
TWI14G0489 Tripterygium wilfordii HOM05D000371 ORTHO05D006340 4.8e-11 70.9 38 84.2
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 6.3e-11 70.5 37 83.8
PGR142G0954 Punica granatum HOM05D000371 ORTHO05D006340 6.3e-11 70.5 38 86.8
BcaC01g03603 Brassica carinata HOM05D000371 ORTHO05D006340 8.3e-11 70.1 46 67.4
MD04G1047400 Malus domestica HOM05D000371 ORTHO05D006340 8.3e-11 70.1 38 86.8
Nitab4.5_0001264g0200 Nicotiana tabacum HOM05D000371 ORTHO05D006340 8.3e-11 70.1 37 86.5
SalBow8G3269 Salvia bowleyana HOM05D000371 ORTHO05D006340 8.3e-11 70.1 38 81.6
Aa31LG3G17510 Aethionema arabicum HOM05D000371 ORTHO05D006340 1.1e-10 69.7 38 78.9
Aqoxy5G01319 Aquilegia oxysepala HOM05D000371 ORTHO05D006340 1.1e-10 69.7 38 81.6
DCAR_004188 Daucus carota HOM05D000371 ORTHO05D006340 1.1e-10 69.7 38 81.6
Gohir.A03G176100 Gossypium hirsutum HOM05D000371 ORTHO05D006340 1.1e-10 69.7 38 81.6
Gohir.D02G199900 Gossypium hirsutum HOM05D000371 ORTHO05D006340 1.1e-10 69.7 38 81.6
Gorai.005G224600 Gossypium raimondii HOM05D000371 ORTHO05D006340 1.1e-10 69.7 38 81.6
Oeu027061.1 Olea europaea HOM05D000371 ORTHO05D006340 1.1e-10 69.7 39 79.5
Sc08g0003840 Simmondsia chinensis HOM05D000371 ORTHO05D006340 1.1e-10 69.7 37 83.8
BcaC03g18259 Brassica carinata HOM05D000160 ORTHO05D001344 1.4e-10 69.3 38 76.3
C02p63310 Brassica napus HOM05D000371 ORTHO05D006340 1.4e-10 69.3 38 76.3
BolC2t12401H Brassica oleracea HOM05D000371 ORTHO05D006340 1.4e-10 69.3 38 76.3
HanXRQChr15g0491901 Helianthus annuus HOM05D000371 ORTHO05D006340 1.4e-10 69.3 37 83.8
THA.LOC104799807 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 1.4e-10 69.3 38 78.9
THA.LOC104818449 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 1.4e-10 69.3 38 78.9
AL8G41710 Arabidopsis lyrata HOM05D000371 ORTHO05D006340 1.8e-10 68.9 38 76.3
AT5G64350 Arabidopsis thaliana HOM05D000371 ORTHO05D006340 1.8e-10 68.9 38 76.3
Carub.0008s2515 Capsella rubella HOM05D000371 ORTHO05D006340 1.8e-10 68.9 38 76.3
CAN.G523.27 Capsicum annuum HOM05D000371 ORTHO05D006340 1.8e-10 68.9 37 83.8
PRCOL_00001212 Prasinoderma coloniale HOM05D000371 ORTHO05D006340 1.8e-10 68.9 37 81.1
EL10Ac9g22085 Beta vulgaris HOM05D000371 ORTHO05D006340 2.4e-10 68.6 37 81.1
Os02g0760300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006340 2.4e-10 68.6 38 78.9
PSO541G0529 Papaver somniferum HOM05D000371 ORTHO05D006340 2.4e-10 68.6 38 81.6
PSO675G6035 Papaver somniferum HOM05D000371 ORTHO05D006340 2.4e-10 68.6 38 81.6
SalBow6G0133 Salvia bowleyana HOM05D000371 ORTHO05D006340 2.4e-10 68.6 38 73.7
SalBow6G1985 Salvia bowleyana HOM05D000371 ORTHO05D006340 2.4e-10 68.6 38 73.7
Cc02_g21010 Coffea canephora HOM05D000371 ORTHO05D006340 3.1e-10 68.2 37 81.1
SMO365G0026 Selaginella moellendorffii HOM05D000371 ORTHO05D006340 4.1e-10 67.8 38 76.3
Zm00001eb255600 Zea mays HOM05D000371 ORTHO05D006340 4.1e-10 67.8 38 78.9
BcaB07g29739 Brassica carinata HOM05D000371 ORTHO05D006340 5.3e-10 67.4 38 76.3
Migut.B00563 Erythranthe guttata HOM05D000371 ORTHO05D006340 5.3e-10 67.4 38 76.3
Migut.N01091 Erythranthe guttata HOM05D000371 ORTHO05D006340 5.3e-10 67.4 37 78.4
AagrBONN_evm.TU.Sc2ySwM_344.182 Anthoceros agrestis HOM05D000371 ORTHO05D006340 7.0e-10 67.0 37 81.1
Nitab4.5_0002650g0070 Nicotiana tabacum HOM05D000371 ORTHO05D006340 7.0e-10 67.0 37 83.8
C03p50660 Brassica napus HOM05D000371 ORTHO05D006340 9.1e-10 66.6 36 77.8
Prupe.8G067900 Prunus persica HOM05D000371 ORTHO05D006340 9.1e-10 66.6 38 78.9
Hund23433 Selenicereus undatus HOM05D000371 ORTHO05D006340 1.2e-09 66.2 37 78.4
Hund23435 Selenicereus undatus HOM05D000371 ORTHO05D006340 1.2e-09 66.2 37 78.4
AUR62027120 Chenopodium quinoa HOM05D000371 ORTHO05D006340 1.6e-09 65.9 37 78.4
unitig_62.g23629 Utricularia gibba HOM05D000371 ORTHO05D006340 1.0e-08 63.2 54 63.0
AUR62012896 Chenopodium quinoa HOM05D000371 ORTHO05D006340 1.3e-08 62.8 37 75.7
PSO541G5676 Papaver somniferum HOM05D007460 ORTHO05D009396 1.3e-08 62.8 37 75.7
PSO675G2104 Papaver somniferum HOM05D007460 ORTHO05D009396 1.3e-08 62.8 37 75.7
CBR_g19026 Chara braunii HOM05D000371 ORTHO05D006340 3.8e-08 61.2 37 73.0
Pp3c1_27870 Physcomitrium patens HOM05D000371 ORTHO05D006340 6.5e-08 60.5 38 63.2
Mapoly0147s0023 Marchantia polymorpha HOM05D001298 ORTHO05D006340 1.5e-07 59.3 38 71.1
MCO04G153 Micromonas commoda HOM05D000371 ORTHO05D006340 1.5e-07 59.3 39 64.1
Mapoly0091s0066 Marchantia polymorpha HOM05D000371 ORTHO05D006340 1.9e-07 58.9 38 68.4
BcaB07g29737 Brassica carinata HOM05D000371 ORTHO05D006340 2.5e-07 58.5 32 75.0
SalBow8G3846 Salvia bowleyana HOM05D000371 ORTHO05D006340 3.2e-07 58.2 30 80.0
Lj2g0001614 Lotus japonicus HOM05D001907 ORTHO05D002387 5.5e-07 57.4 61 47.5
VMungo0540G2205 Vigna mungo HOM05D001907 ORTHO05D002387 7.2e-07 57.0 59 45.8
Pp3c9_18040 Physcomitrium patens HOM05D000371 ORTHO05D004413 1.6e-06 55.8 33 69.7
Glyma.20G055800 Glycine max HOM05D001907 ORTHO05D002387 3.6e-06 54.7 59 44.1
Phvul.011G000800 Phaseolus vulgaris HOM05D001907 ORTHO05D002387 3.6e-06 54.7 60 46.7
Pp3c21_11940 Physcomitrium patens HOM05D000371 ORTHO05D004413 6.1e-06 53.9 45 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3862 Anthoceros agrestis HOM05D000371 ORTHO05D001484 8.0e-06 53.5 50 48.0


User provided reference genes

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