Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 0.0e+00 1690.6 909 100.0
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 4.5e-220 768.8 994 48.0
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 4.2e-149 533.1 973 39.8
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 3.5e-140 503.4 1032 36.5
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 5.1e-131 473.0 1021 35.5
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 7.4e-130 469.2 939 35.8
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 2.4e-128 464.2 1145 33.5
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 5.0e-118 429.9 977 34.9
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 3.6e-116 423.7 980 35.1
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 3.6e-116 423.7 999 34.1
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 1.8e-112 411.4 1038 32.2
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 2.9e-110 404.1 1041 32.2
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 4.7e-108 396.7 935 33.3
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 5.3e-104 383.3 1028 32.5
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.4e-99 368.6 978 32.0
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.2e-97 361.3 994 31.3
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.8e-97 360.9 1052 29.9
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 5.3e-96 356.7 1021 32.5
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 1.5e-93 348.6 986 32.7
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 5.2e-91 340.1 983 31.6
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 2.2e-89 334.7 1039 29.7
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 4.1e-88 330.5 939 31.6
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 9.1e-88 329.3 1058 27.1
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 1.3e-86 325.5 1005 31.0
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 1.3e-86 325.5 1017 28.7
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.7e-86 325.1 985 29.9
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 5.0e-86 323.6 981 30.4
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 8.6e-86 322.8 986 30.5
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 3.3e-85 320.9 977 30.3
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 5.5e-85 320.1 955 30.4
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 1.0e-83 315.8 958 30.3
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 2.0e-82 311.6 1026 28.5
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 3.4e-82 310.8 982 30.2
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 3.2e-80 304.3 1026 28.6
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 7.0e-80 303.1 978 28.8
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 7.0e-80 303.1 1010 28.4
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.7e-78 298.5 974 29.2
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.0e-78 297.0 786 31.9
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 8.0e-76 289.7 712 33.3
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 4.0e-75 287.3 1024 28.8
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 4.0e-75 287.3 1016 28.4
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 5.2e-75 287.0 1031 28.1
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 1.4e-72 278.9 988 28.4
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 2.4e-72 278.1 620 34.5
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 3.2e-72 277.7 872 29.6
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.0e-70 272.7 784 30.4
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.3e-70 272.3 553 36.9
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.9e-70 270.8 1036 27.6
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 7.3e-69 266.5 809 30.0
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 3.4e-66 257.7 1047 28.1
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 4.9e-65 253.8 1091 25.4
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 3.2e-64 251.1 1014 26.9
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 3.2e-64 251.1 586 33.4
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 9.2e-64 249.6 979 31.3
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 1.3e-62 245.7 1035 30.5
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 5.6e-61 240.4 861 27.8
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 1.6e-60 238.8 796 30.3
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 2.9e-57 228.0 1091 25.5
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 5.1e-54 217.2 592 29.2
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 8.6e-54 216.5 593 28.7
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 7.6e-50 203.4 609 29.4
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 2.9e-49 201.4 318 42.1
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 6.4e-49 200.3 504 31.2
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 1.1e-48 199.5 558 29.7
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 1.1e-48 199.5 549 29.9
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 1.1e-48 199.5 614 30.1
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 1.4e-48 199.1 505 31.1
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 2.4e-48 198.4 624 30.0
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 7.1e-48 196.8 882 26.4
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 7.8e-47 193.4 583 29.8
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 2.3e-46 191.8 497 30.0
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 1.1e-45 189.5 531 29.4
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 1.9e-45 188.7 504 30.0
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 4.0e-43 181.0 858 24.7
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 1.1e-40 172.9 227 46.7
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 3.2e-40 171.4 671 28.0
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.2e-34 152.9 258 41.1
Actinidia38851 Actinidia chinensis HOM05D007562 ORTHO05D009721 2.2e-33 148.7 156 55.1
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.1e-32 146.4 280 35.4
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.0e-30 139.8 518 26.4
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 1.3e-30 139.4 667 25.8
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 2.8e-28 131.7 321 32.7
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 6.0e-23 114.0 338 27.8
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 4.8e-20 104.4 279 29.7
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.4e-19 102.8 339 28.6
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 2.5e-16 92.0 279 26.9
Glyma.02G073401 Glycine max HOM05D007562 ORTHO05D009721 9.3e-16 90.1 282 25.9
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 1.8e-14 85.9 814 20.5
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 2.8e-12 78.6 788 21.8
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 4.8e-12 77.8 857 21.5
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 4.8e-12 77.8 807 21.7
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.2e-10 73.2 813 23.5
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.2e-10 73.2 859 21.7
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 2.6e-10 72.0 935 21.5
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.4e-10 71.6 859 20.1
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 5.9e-10 70.9 281 25.3
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 7.7e-10 70.5 848 22.5
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 7.7e-10 70.5 921 21.2
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 1.0e-09 70.1 289 24.2
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 1.7e-09 69.3 805 20.4
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 3.8e-09 68.2 803 20.8
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.4e-08 66.2 786 21.0
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 2.5e-08 65.5 69 53.6
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 3.2e-08 65.1 51 64.7
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 4.2e-08 64.7 918 21.4
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 5.5e-08 64.3 61 62.3
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 7.2e-08 63.9 815 20.0
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 7.2e-08 63.9 803 19.7
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 9.4e-08 63.5 795 20.6
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 9.4e-08 63.5 51 62.7
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 1.2e-07 63.2 51 60.8
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 1.2e-07 63.2 51 60.8
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 1.2e-07 63.2 51 60.8
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.1e-07 62.4 872 21.3
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 3.6e-07 61.6 204 31.9
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 7.9e-07 60.5 177 31.6
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 7.9e-07 60.5 62 53.2
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 7.9e-07 60.5 62 53.2
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 7.9e-07 60.5 51 60.8
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 7.9e-07 60.5 268 23.9
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 7.9e-07 60.5 406 20.2
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.0e-06 60.1 51 60.8
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.0e-06 60.1 145 35.2
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.8e-06 59.3 51 62.7
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.8e-06 59.3 51 56.9
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 2.3e-06 58.9 51 60.8
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 2.3e-06 58.9 868 20.5
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 2.3e-06 58.9 187 31.6
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 2.3e-06 58.9 51 62.7
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 3.0e-06 58.5 65 56.9
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 3.0e-06 58.5 51 58.8
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 3.0e-06 58.5 51 56.9
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 3.0e-06 58.5 918 19.8
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 3.0e-06 58.5 63 49.2
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.0e-06 58.5 915 20.8
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 3.9e-06 58.2 50 62.0
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 5.1e-06 57.8 169 33.7
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 5.1e-06 57.8 84 41.7
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 5.1e-06 57.8 51 60.8
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 5.1e-06 57.8 51 56.9
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 5.1e-06 57.8 62 51.6
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 6.7e-06 57.4 51 56.9
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 6.7e-06 57.4 143 35.0
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 6.7e-06 57.4 143 35.0
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 6.7e-06 57.4 82 42.7
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 8.8e-06 57.0 49 63.3
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 8.8e-06 57.0 51 56.9
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 8.8e-06 57.0 190 29.5
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 8.8e-06 57.0 932 20.3
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 8.8e-06 57.0 51 62.7
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 8.8e-06 57.0 51 58.8


User provided reference genes

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