Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037025 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 8.2e-33 143.3 80 100.0
CSS0007335 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 7.2e-29 130.2 81 93.8
CSS0037971 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 1.5e-26 122.5 96 79.2
CSS0038801 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 5.7e-26 120.6 91 78.0
CSS0008651 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 1.2e-15 86.3 93 57.0
Potri.018G087500 Populus trichocarpa HOM05D001259 ORTHO05D001103 1.2e-15 86.3 95 55.8
Hma1.2p1_0012F.1_g007350 Hydrangea macrophylla HOM05D001259 ORTHO05D001103 2.0e-15 85.5 92 60.9
Dinv36689 Davidia involucrata HOM05D001259 ORTHO05D001103 2.6e-15 85.1 96 54.2
Dinv41665 Davidia involucrata HOM05D001259 ORTHO05D001103 2.6e-15 85.1 95 58.9
QL02p041645 Quercus lobata HOM05D001259 ORTHO05D001103 3.5e-15 84.7 94 55.3
QL02p041676 Quercus lobata HOM05D001259 ORTHO05D001103 3.5e-15 84.7 94 55.3
Rhsim03G0236800 Rhododendron simsii HOM05D001259 ORTHO05D001103 4.5e-15 84.3 92 56.5
Sabra18G0075700 Salix brachista HOM05D001259 ORTHO05D001103 1.7e-14 82.4 96 53.1
GSVIVG01015304001 Vitis vinifera HOM05D001259 ORTHO05D001103 3.8e-14 81.3 93 54.8
Manes.16G108400 Manihot esculenta HOM05D001259 ORTHO05D001103 5.0e-14 80.9 96 52.1
Nitab4.5_0000566g0080 Nicotiana tabacum HOM05D001259 ORTHO05D001103 5.0e-14 80.9 92 54.3
Medtr8g102510 Medicago truncatula HOM05D001259 ORTHO05D001103 8.5e-14 80.1 95 53.7
COL.COLO4_34746 Corchorus olitorius HOM05D001259 ORTHO05D001103 1.1e-13 79.7 91 56.0
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.5e-13 79.3 95 51.6
Prupe.7G220100 Prunus persica HOM05D001259 ORTHO05D001103 1.5e-13 79.3 93 54.8
Cc06_g10450 Coffea canephora HOM05D001259 ORTHO05D001103 2.5e-13 78.6 79 58.2
Actinidia32653 Actinidia chinensis HOM05D001259 ORTHO05D001103 4.2e-13 77.8 98 50.0
MSTRG.26384 Avicennia marina HOM05D001259 ORTHO05D001103 7.2e-13 77.0 95 51.6
Nn6g35325 Nelumbo nucifera HOM05D001259 ORTHO05D001103 7.2e-13 77.0 97 50.5
Cfa003183 Carpinus fangiana HOM05D001259 ORTHO05D001103 9.4e-13 76.6 96 53.1
Lj4g0011285 Lotus japonicus HOM05D001259 ORTHO05D001103 1.2e-12 76.3 94 52.1
Glyma.05G226900 Glycine max HOM05D001259 ORTHO05D001103 1.6e-12 75.9 80 56.2
CAN.G1241.32 Capsicum annuum HOM05D001259 ORTHO05D001103 2.1e-12 75.5 90 51.1
Psat7g016960 Pisum sativum HOM05D001259 ORTHO05D001103 2.1e-12 75.5 94 51.1
Thecc.09G100900 Theobroma cacao HOM05D001259 ORTHO05D001103 2.1e-12 75.5 93 50.5
HanXRQChr03g0061201 Helianthus annuus HOM05D001259 ORTHO05D001103 2.7e-12 75.1 95 52.6
Oeu064181.1 Olea europaea HOM05D001259 ORTHO05D001103 2.7e-12 75.1 93 52.7
Phvul.002G308900 Phaseolus vulgaris HOM05D001259 ORTHO05D001103 3.6e-12 74.7 94 51.1
Sc18g0001480 Simmondsia chinensis HOM05D001259 ORTHO05D001103 3.6e-12 74.7 93 48.4
Atru.chr7.1461 Acer truncatum HOM05D001259 ORTHO05D001103 4.7e-12 74.3 97 47.4
CSS0005097 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 4.7e-12 74.3 90 56.7
Ciclev10008680m.g Citrus clementina HOM05D001259 ORTHO05D001103 8.0e-12 73.6 96 46.9
Glyma.08G033700 Glycine max HOM05D001259 ORTHO05D001103 8.0e-12 73.6 94 52.1
ECA240G0832 Erigeron canadensis HOM05D001259 ORTHO05D001103 1.0e-11 73.2 95 51.6
Lalb_Chr24g0397321 Lupinus albus HOM05D001259 ORTHO05D001103 1.0e-11 73.2 90 48.9
TAR624G0650 Trochodendron aralioides HOM05D001259 ORTHO05D001103 1.0e-11 73.2 88 52.3
DCAR_010690 Daucus carota HOM05D001259 ORTHO05D001103 1.4e-11 72.8 78 53.8
MD02G1065400 Malus domestica HOM05D001259 ORTHO05D001103 1.8e-11 72.4 86 54.7
PGSC0003DMG400000297 Solanum tuberosum HOM05D001259 ORTHO05D001103 1.8e-11 72.4 90 47.8
vmacro06251 Vaccinium macrocarpon HOM05D001259 ORTHO05D001103 1.8e-11 72.4 95 48.4
Lj2g0015337 Lotus japonicus HOM05D001259 ORTHO05D001103 2.3e-11 72.0 81 55.6
MD15G1196300 Malus domestica HOM05D001259 ORTHO05D001103 2.3e-11 72.0 82 52.4
Solyc12g008460.2 Solanum lycopersicum HOM05D001259 ORTHO05D001103 2.3e-11 72.0 90 47.8
CiPaw.04G158200 Carya illinoinensis HOM05D001259 ORTHO05D001103 3.0e-11 71.6 94 51.1
ECA240G1616 Erigeron canadensis HOM05D001259 ORTHO05D001103 3.0e-11 71.6 95 50.5
Sopen12g003410 Solanum pennellii HOM05D001259 ORTHO05D001103 3.0e-11 71.6 90 47.8
TPR.G21374 Trifolium pratense HOM05D001259 ORTHO05D001103 3.0e-11 71.6 94 47.9
CsaV3_1G039770 Cucumis sativus L. HOM05D001259 ORTHO05D001103 5.2e-11 70.9 79 55.7
PGR142G4262 Punica granatum HOM05D001259 ORTHO05D001103 5.2e-11 70.9 95 48.4
Hund09111 Selenicereus undatus HOM05D001259 ORTHO05D001103 5.2e-11 70.9 99 47.5
TPR.G23469 Trifolium pratense HOM05D001259 ORTHO05D001103 5.2e-11 70.9 94 50.0
AUR62021411 Chenopodium quinoa HOM05D001259 ORTHO05D001103 6.7e-11 70.5 78 55.1
Sed0008394 Sechium edule HOM05D001259 ORTHO05D001103 6.7e-11 70.5 78 55.1
VMungo0251G0814 Vigna mungo HOM05D001259 ORTHO05D001103 6.7e-11 70.5 80 51.2
Aa31LG9G1990 Aethionema arabicum HOM05D001259 ORTHO05D001103 1.1e-10 69.7 90 50.0
Eucgr.C00998 Eucalyptus grandis HOM05D001259 ORTHO05D001103 1.1e-10 69.7 94 50.0
Gohir.A08G243000 Gossypium hirsutum HOM05D001259 ORTHO05D001103 1.1e-10 69.7 75 57.3
Potri.006G164748 Populus trichocarpa HOM05D001259 ORTHO05D001103 1.5e-10 69.3 95 48.4
AUR62010915 Chenopodium quinoa HOM05D001259 ORTHO05D001103 2.0e-10 68.9 78 55.1
FAN28G1996 Fragaria x ananassa HOM05D001259 ORTHO05D001103 2.0e-10 68.9 91 48.4
Sabra18G0075800 Salix brachista HOM05D001259 ORTHO05D001103 2.0e-10 68.9 95 46.3
TWI63G0321 Tripterygium wilfordii HOM05D001259 ORTHO05D001103 2.0e-10 68.9 97 48.5
CiPaw.04G158100 Carya illinoinensis HOM05D001259 ORTHO05D001103 2.6e-10 68.6 95 48.4
Migut.K00537 Erythranthe guttata HOM05D001259 ORTHO05D001103 2.6e-10 68.6 97 50.5
Gorai.004G281800 Gossypium raimondii HOM05D001259 ORTHO05D001103 2.6e-10 68.6 79 58.2
RcHm_v2.0_Chr2g0091841 Rosa chinensis HOM05D001259 ORTHO05D001103 2.6e-10 68.6 91 48.4
ClCG03G016160 Citrullus lanatus HOM05D001259 ORTHO05D001103 3.3e-10 68.2 79 53.2
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 3.3e-10 68.2 77 54.5
arahy.Tifrunner.gnm1.ann1.E41BXM Arachis hypogaea HOM05D001259 ORTHO05D001103 4.4e-10 67.8 90 47.8
Lalb_Chr05g0223221 Lupinus albus HOM05D001259 ORTHO05D001103 4.4e-10 67.8 95 49.5
Carub.0003s2164 Capsella rubella HOM05D001259 ORTHO05D001103 5.7e-10 67.4 92 45.7
Gohir.D08G263900 Gossypium hirsutum HOM05D001259 ORTHO05D001103 5.7e-10 67.4 79 57.0
PSO210G1731 Papaver somniferum HOM05D001259 ORTHO05D001103 5.7e-10 67.4 99 46.5
AT3G21600 Arabidopsis thaliana HOM05D001259 ORTHO05D001103 7.5e-10 67.0 92 46.7
Gohir.A06G067100 Gossypium hirsutum HOM05D001259 ORTHO05D001103 7.5e-10 67.0 83 50.6
Medtr6g088680 Medicago truncatula HOM05D001259 ORTHO05D001103 7.5e-10 67.0 80 48.8
arahy.Tifrunner.gnm1.ann1.436L1R Arachis hypogaea HOM05D001259 ORTHO05D001103 9.7e-10 66.6 79 53.2
arahy.Tifrunner.gnm1.ann1.VH3KGW Arachis hypogaea HOM05D001259 ORTHO05D001103 9.7e-10 66.6 79 53.2
CANSAT56G3717 Cannabis sativa HOM05D001259 ORTHO05D001103 9.7e-10 66.6 91 45.1
Glyma.01G008100 Glycine max HOM05D001259 ORTHO05D001103 1.3e-09 66.2 93 44.1
Psat1g047160 Pisum sativum HOM05D001259 ORTHO05D001103 1.3e-09 66.2 80 47.5
AL3G35720 Arabidopsis lyrata HOM05D001259 ORTHO05D001103 1.7e-09 65.9 92 45.7
Ca_25570_v3 Cicer arietinum L. HOM05D001259 ORTHO05D001103 2.2e-09 65.5 80 47.5
Sabra06G0126600 Salix brachista HOM05D001259 ORTHO05D001103 2.2e-09 65.5 95 47.4
PSO210G2822 Papaver somniferum HOM05D001259 ORTHO05D001103 2.8e-09 65.1 98 45.9
VMungo0464G1422 Vigna mungo HOM05D001259 ORTHO05D001103 2.8e-09 65.1 93 44.1
AL7G40100 Arabidopsis lyrata HOM05D001259 ORTHO05D001103 3.7e-09 64.7 90 45.6
Aa31LG8G8260 Aethionema arabicum HOM05D001259 ORTHO05D001103 4.8e-09 64.3 91 46.2
A05p27130 Brassica napus HOM05D001259 ORTHO05D001103 6.3e-09 63.9 83 45.8
BraA05t21599Z Brassica rapa HOM05D001259 ORTHO05D001103 6.3e-09 63.9 83 45.8
Thhalv10020930m.g Eutrema salsugineum HOM05D001259 ORTHO05D001103 6.3e-09 63.9 95 45.3
Glyma.16G078200 Glycine max HOM05D001259 ORTHO05D001103 6.3e-09 63.9 93 43.0
BcaNung00274 Brassica carinata HOM05D001259 ORTHO05D001103 8.2e-09 63.5 89 44.9
SalBow1G3959 Salvia bowleyana HOM05D001259 ORTHO05D001103 8.2e-09 63.5 95 46.3
SalBow1G5873 Salvia bowleyana HOM05D001259 ORTHO05D001103 8.2e-09 63.5 95 46.3
CARHR097570 Cardamine hirsuta HOM05D001259 ORTHO05D001103 1.1e-08 63.2 93 44.1
BcaC09g50235 Brassica carinata HOM05D001259 ORTHO05D001103 1.4e-08 62.8 89 43.8
BolC1t02691H Brassica oleracea HOM05D001259 ORTHO05D001103 1.4e-08 62.8 89 43.8
BcaB06g26265 Brassica carinata HOM05D001259 ORTHO05D001103 1.8e-08 62.4 83 44.6
BcaC05g28153 Brassica carinata HOM05D001259 ORTHO05D001103 1.8e-08 62.4 83 44.6
C01p27630 Brassica napus HOM05D001259 ORTHO05D001103 1.8e-08 62.4 86 43.0
C05p41870 Brassica napus HOM05D001259 ORTHO05D001103 1.8e-08 62.4 83 44.6
BolC5t32920H Brassica oleracea HOM05D001259 ORTHO05D001103 1.8e-08 62.4 83 44.6
Phvul.004G170500 Phaseolus vulgaris HOM05D001259 ORTHO05D001103 1.8e-08 62.4 93 41.9
Carub.0007s2646 Capsella rubella HOM05D001259 ORTHO05D001103 2.4e-08 62.0 90 43.3
EL10Ac8g18382 Beta vulgaris HOM05D001259 ORTHO05D001103 3.1e-08 61.6 88 42.0
Thhalv10025458m.g Eutrema salsugineum HOM05D001259 ORTHO05D001103 5.3e-08 60.8 89 44.9
Sp3g19620 Schrenkiella parvula HOM05D001259 ORTHO05D001103 5.3e-08 60.8 96 43.8
THA.LOC104802547 Tarenaya hassleriana HOM05D001259 ORTHO05D001103 5.3e-08 60.8 94 42.6
FAN23G1183 Fragaria x ananassa HOM05D001259 ORTHO05D001103 7.0e-08 60.5 102 43.1
Lsat_1_v5_gn_7_39781 Lactuca sativa HOM05D001259 ORTHO05D001103 7.0e-08 60.5 95 43.2
Sp7g13670 Schrenkiella parvula HOM05D001259 ORTHO05D001103 1.2e-07 59.7 86 41.9
CDE05G3309 Ceratophyllum demersum HOM05D001259 ORTHO05D001103 1.6e-07 59.3 87 46.0
Os01g0723100 Oryza sativa ssp. japonica HOM05D001259 ORTHO05D001103 2.0e-07 58.9 73 47.9
Zm00001eb361690 Zea mays HOM05D001259 ORTHO05D001103 4.5e-07 57.8 83 45.8
CANSAT56G1287 Cannabis sativa HOM05D001259 ORTHO05D001103 5.9e-07 57.4 94 43.6
CANSAT56G3268 Cannabis sativa HOM05D001259 ORTHO05D001103 5.9e-07 57.4 94 43.6
Phvul.004G014300 Phaseolus vulgaris HOM05D001259 ORTHO05D001103 5.9e-07 57.4 88 42.0
MBI04_g20309_MAGBIO Magnolia biondii HOM05D001259 ORTHO05D001103 7.7e-07 57.0 90 44.4
A01p22130 Brassica napus HOM05D001259 ORTHO05D001103 1.0e-06 56.6 89 41.6
BraA01t02122Z Brassica rapa HOM05D001259 ORTHO05D001103 1.0e-06 56.6 89 41.6
Actinidia07453 Actinidia chinensis HOM05D001259 ORTHO05D001103 1.3e-06 56.2 51 64.7
Peaxi162Scf00665g00339 Petunia axillaris HOM05D001259 ORTHO05D001103 2.2e-06 55.5 67 52.2


User provided reference genes

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