Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 0.0e+00 1213.0 652 100.0
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 0.0e+00 1186.4 653 98.3
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 2.6e-108 397.1 754 45.1
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 8.5e-104 382.1 727 44.8
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 6.6e-80 302.8 701 40.2
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 6.2e-70 269.6 767 36.4
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 8.9e-69 265.8 318 55.7
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.4e-68 263.8 761 34.0
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.2e-66 257.3 714 35.2
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 9.2e-66 255.8 759 34.0
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 1.3e-64 251.9 683 36.3
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 6.0e-57 226.5 772 33.3
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 8.6e-56 222.6 688 33.7
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 1.5e-55 221.9 706 33.9
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 3.3e-55 220.7 740 33.8
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 3.6e-46 190.7 720 33.8
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 4.0e-45 187.2 723 31.4
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.9e-42 178.3 723 30.0
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 5.1e-40 170.2 717 31.2
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.5e-39 168.7 830 29.3
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 1.4e-37 162.2 744 30.0
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 4.0e-37 160.6 860 29.5
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 5.3e-37 160.2 893 27.4
Dinv30428 Davidia involucrata HOM05D008208 ORTHO05D010143 5.3e-37 160.2 372 41.4
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.2e-36 159.1 677 32.3
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 2.2e-35 154.8 856 26.4
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 1.4e-34 152.1 723 30.8
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 1.9e-34 151.8 751 30.4
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 5.5e-34 150.2 711 30.4
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 5.1e-32 143.7 696 30.3
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 1.5e-31 142.1 716 30.9
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 2.5e-31 141.4 755 29.0
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 3.3e-31 141.0 652 31.7
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.8e-30 137.9 727 31.4
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.5e-28 132.1 753 30.3
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 7.6e-28 129.8 745 29.8
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 6.5e-27 126.7 709 28.3
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 8.4e-27 126.3 668 29.5
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 2.5e-26 124.8 810 26.7
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 7.1e-26 123.2 852 26.2
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.2e-25 122.5 866 25.8
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.1e-25 121.7 738 29.5
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.3e-24 119.0 754 29.0
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 1.8e-24 118.6 706 28.8
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 8.2e-22 109.8 200 44.5
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 4.1e-21 107.5 600 28.5
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 4.1e-21 107.5 589 28.4
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 6.9e-21 106.7 694 27.7
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 2.0e-20 105.1 760 28.2
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 5.9e-20 103.6 661 28.6
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 3.2e-18 97.8 749 27.1
Lsat_1_v5_gn_5_134320 Lactuca sativa HOM05D008208 ORTHO05D010143 4.6e-17 94.0 661 25.1
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 6.7e-16 90.1 634 28.4
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 8.7e-16 89.7 672 27.1
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 5.7e-15 87.0 700 26.1
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 1.6e-14 85.5 739 27.1
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.4e-13 81.6 761 27.1
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 9.1e-13 79.7 749 25.2
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 5.9e-12 77.0 641 24.8
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 7.7e-12 76.6 761 27.2
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.9e-11 74.7 311 28.3
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 6.5e-11 73.6 483 26.7
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.5e-11 73.2 230 31.3
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.5e-10 70.5 276 30.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.5e-10 70.5 255 29.4
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 5.5e-10 70.5 228 34.6
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 5.5e-10 70.5 777 24.5
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.2e-10 70.1 254 29.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 7.2e-10 70.1 225 33.8
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 9.4e-10 69.7 199 34.7
Migut.I00959 Erythranthe guttata HOM05D008208 ORTHO05D010143 9.4e-10 69.7 393 30.8
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 2.1e-09 68.6 240 31.2
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.7e-09 68.2 197 33.0
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 3.6e-09 67.8 220 31.4
Aqoxy1G02129 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 4.6e-09 67.4 171 35.1
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 4.6e-09 67.4 202 32.7
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 4.6e-09 67.4 148 37.2
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 6.1e-09 67.0 678 24.9
RcHm_v2.0_Chr2g0140811 Rosa chinensis HOM05D008208 ORTHO05D010143 6.1e-09 67.0 407 25.3
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.0e-08 66.2 199 30.7
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.0e-08 66.2 207 34.3
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.3e-08 65.1 254 29.9
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 3.0e-08 64.7 214 31.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.9e-08 64.3 207 30.0
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 5.1e-08 63.9 286 30.1
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 6.7e-08 63.5 181 33.7
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 6.7e-08 63.5 186 34.4
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 8.8e-08 63.2 235 29.4
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 8.8e-08 63.2 164 31.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.0e-07 62.0 155 36.1
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 2.0e-07 62.0 236 30.1
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 2.0e-07 62.0 723 25.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.0e-07 62.0 238 29.0
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.6e-07 61.6 188 30.9
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 3.3e-07 61.2 215 30.2
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 3.3e-07 61.2 237 28.3
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 3.3e-07 61.2 158 35.4
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.7e-07 60.5 152 32.2
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 5.7e-07 60.5 287 30.0
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 5.7e-07 60.5 210 30.0
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 5.7e-07 60.5 213 32.4
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 5.7e-07 60.5 174 35.1
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 7.4e-07 60.1 274 28.1
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 9.7e-07 59.7 159 31.4
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 9.7e-07 59.7 265 27.5
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.3e-06 59.3 205 29.8
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.7e-06 58.9 193 28.5
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.7e-06 58.9 220 29.1
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.2e-06 58.5 229 28.4
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.7e-06 57.8 275 27.3
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.7e-06 57.8 275 27.3
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 3.7e-06 57.8 252 27.4
Atru.chr1.3545 Acer truncatum HOM05D008208 ORTHO05D010143 4.8e-06 57.4 154 31.8
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 4.8e-06 57.4 263 28.5
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 6.3e-06 57.0 673 24.2


User provided reference genes

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