Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 8.7e-51 203.4 104 100.0
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.3e-25 119.8 88 65.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.0e-23 112.5 94 58.5
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 4.5e-23 111.3 96 59.4
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.0e-22 110.2 95 58.9
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 6.5e-22 107.5 95 57.9
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 7.9e-20 100.5 94 55.3
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.6e-17 92.8 87 52.9
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.8e-17 92.0 105 50.5
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 6.3e-17 90.9 89 50.6
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.1e-16 90.1 86 54.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.4e-16 89.7 104 48.1
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.4e-16 89.7 104 48.1
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.4e-16 89.7 104 48.1
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 3.1e-16 88.6 92 50.0
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 6.9e-16 87.4 98 52.0
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.5e-15 86.3 86 51.2
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.5e-15 86.3 98 52.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.6e-15 85.5 88 51.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.4e-15 85.1 94 41.5
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 5.9e-15 84.3 97 50.5
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 5.9e-15 84.3 90 46.7
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 7.7e-15 84.0 90 47.8
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.7e-14 82.8 88 44.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.9e-14 82.0 94 52.1
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.8e-14 81.6 87 46.0
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 6.5e-14 80.9 91 41.8
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.5e-14 80.5 64 64.1
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 8.5e-14 80.5 92 39.1
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 8.5e-14 80.5 92 39.1
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.1e-13 80.1 89 49.4
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.1e-13 80.1 89 42.7
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.9e-13 79.3 92 39.1
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.9e-13 79.3 91 42.9
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.5e-13 79.0 88 44.3
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.2e-13 78.6 82 50.0
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 3.2e-13 78.6 89 44.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.2e-13 78.2 100 48.0
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.2e-12 76.6 92 45.7
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-12 76.6 92 45.7
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-12 76.6 92 45.7
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.6e-12 76.3 88 47.7
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.6e-12 76.3 97 48.5
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.6e-12 76.3 93 41.9
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.6e-12 76.3 89 39.3
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.7e-12 75.5 89 43.8
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.6e-12 75.1 97 48.5
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 4.6e-12 74.7 82 46.3
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 4.6e-12 74.7 95 43.2
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 4.6e-12 74.7 89 39.3
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 4.6e-12 74.7 88 48.9
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 7.9e-12 73.9 91 40.7
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 7.9e-12 73.9 90 44.4
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.0e-11 73.6 87 41.4
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.4e-11 73.2 86 41.9
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.8e-11 72.8 89 46.1
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.3e-11 72.4 94 42.6
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.3e-11 72.4 94 42.6
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.0e-11 72.0 92 43.5
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.0e-11 72.0 92 43.5
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.0e-11 72.0 92 43.5
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 3.9e-11 71.6 83 44.6
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 5.1e-11 71.2 91 39.6
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 5.1e-11 71.2 90 40.0
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 5.1e-11 71.2 87 44.8
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 8.8e-11 70.5 88 44.3
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 8.8e-11 70.5 86 41.9
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.1e-10 70.1 94 42.6
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.1e-10 70.1 94 42.6
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.1e-10 70.1 82 43.9
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.5e-10 69.7 86 46.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.5e-10 69.7 85 42.4
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.5e-10 68.9 94 41.5
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.5e-10 68.9 93 39.8
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.3e-10 68.6 89 38.2
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 4.3e-10 68.2 91 37.4
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 5.7e-10 67.8 90 37.8
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 5.7e-10 67.8 91 37.4
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 9.7e-10 67.0 93 40.9
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.7e-09 66.2 83 43.4
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.2e-09 65.9 90 36.7
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 3.7e-09 65.1 87 40.2
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 4.8e-09 64.7 92 42.4
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 8.2e-09 63.9 89 39.3
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-08 63.5 91 46.2
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.1e-08 63.5 85 41.2
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.4e-08 63.2 87 43.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.4e-08 63.2 85 40.0
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-08 62.8 90 45.6
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.1e-08 62.0 92 33.7
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 4.1e-08 61.6 92 33.7
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 4.1e-08 61.6 86 39.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 6.9e-08 60.8 89 40.4
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 9.1e-08 60.5 91 35.2
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.2e-07 60.1 94 38.3
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 2.0e-07 59.3 86 39.5
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.6e-07 58.9 92 32.6
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.6e-07 58.9 92 32.6
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-07 58.9 83 43.4
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.4e-07 58.5 82 43.9
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 4.5e-07 58.2 94 35.1
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-07 58.2 83 43.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.0e-06 57.0 90 38.9
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-06 57.0 76 44.7
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.3e-06 56.6 94 37.2
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.3e-06 56.6 91 30.8
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.9e-06 55.5 84 36.9


User provided reference genes

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