Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036968 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 3.4e-50 201.4 107 100.0
CSS0022375 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109211 2.6e-42 175.3 108 90.7
CSS0025856 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D110646 2.5e-37 158.7 108 85.2
CSS0044659 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 1.1e-29 133.3 98 77.6
CSS0005835 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 2.6e-26 122.1 107 67.3
CSS0028682 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109265 7.4e-21 104.0 100 63.0
CSS0003257 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 3.8e-17 91.7 107 55.1
vmacro20816 Vaccinium macrocarpon HOM05D000291 ORTHO05D000879 3.8e-17 91.7 76 68.4
Actinidia01277 Actinidia chinensis HOM05D000291 ORTHO05D000879 1.4e-16 89.7 78 67.9
Dinv25439 Davidia involucrata HOM05D000291 ORTHO05D000879 2.4e-16 89.0 78 65.4
Sabra18G0116600 Salix brachista HOM05D000291 ORTHO05D000879 4.6e-15 84.7 67 70.1
Potri.018G142800 Populus trichocarpa HOM05D000291 ORTHO05D000879 1.3e-14 83.2 65 70.8
Hma1.2p1_1326F.1_g275810 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 2.3e-14 82.4 77 62.3
Potri.006G075800 Populus trichocarpa HOM05D000291 ORTHO05D000879 2.3e-14 82.4 67 67.2
Cfa013450 Carpinus fangiana HOM05D000291 ORTHO05D000879 5.1e-14 81.3 74 64.9
Sabra06G0056500 Salix brachista HOM05D000291 ORTHO05D000879 6.7e-14 80.9 73 64.4
CiPaw.07G196800 Carya illinoinensis HOM05D000291 ORTHO05D000879 2.5e-13 79.0 77 59.7
GSVIVG01010864001 Vitis vinifera HOM05D000291 ORTHO05D000879 2.5e-13 79.0 77 61.0
CSS0039170 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 1.6e-12 76.3 61 73.8
VMungo1215G0077 Vigna mungo HOM05D000291 ORTHO05D000879 1.6e-12 76.3 52 80.8
Nitab4.5_0000007g0370 Nicotiana tabacum HOM05D000291 ORTHO05D000879 2.8e-12 75.5 77 55.8
Phvul.003G141500 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 2.8e-12 75.5 87 55.2
Medtr2g037980 Medicago truncatula HOM05D000291 ORTHO05D000879 3.7e-12 75.1 44 86.4
Ca_02104_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 6.2e-12 74.3 47 80.9
Glyma.13G100400 Glycine max HOM05D000291 ORTHO05D000879 6.2e-12 74.3 87 54.0
Lj4g0023693 Lotus japonicus HOM05D000291 ORTHO05D000879 1.4e-11 73.2 54 75.9
Dinv41173 Davidia involucrata HOM05D000291 ORTHO05D000879 3.1e-11 72.0 79 58.2
CSS0022651 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 4.0e-11 71.6 43 79.1
ClCG11G011780 Citrullus lanatus HOM05D000291 ORTHO05D000879 4.0e-11 71.6 77 58.4
Duzib150G0075 Durio zibethinus HOM05D000291 ORTHO05D000879 4.0e-11 71.6 76 56.6
TAR383G0754 Trochodendron aralioides HOM05D000291 ORTHO05D000879 5.3e-11 71.2 78 56.4
Atru.chr7.758 Acer truncatum HOM05D000291 ORTHO05D000879 6.9e-11 70.9 77 53.2
Atru.chr7.780 Acer truncatum HOM05D000291 ORTHO05D000879 6.9e-11 70.9 77 53.2
CAN.G67.5 Capsicum annuum HOM05D000291 ORTHO05D000879 6.9e-11 70.9 78 48.7
Haze_22017 Corylus avellana HOM05D000291 ORTHO05D000879 6.9e-11 70.9 75 60.0
Cpa.g.sc95.13 Carica papaya HOM05D000291 ORTHO05D000879 9.0e-11 70.5 58 72.4
Solyc12g017430.3 Solanum lycopersicum HOM05D000291 ORTHO05D000879 9.0e-11 70.5 74 55.4
Thecc.09G185800 Theobroma cacao HOM05D000291 ORTHO05D000879 1.2e-10 70.1 82 52.4
PGSC0003DMG400009667 Solanum tuberosum HOM05D000291 ORTHO05D000879 1.5e-10 69.7 76 53.9
Duzib168G0006 Durio zibethinus HOM05D000291 ORTHO05D000879 2.6e-10 68.9 86 54.7
MSTRG.19374 Avicennia marina HOM05D000291 ORTHO05D000879 3.4e-10 68.6 77 50.6
Glyma.17G059500 Glycine max HOM05D000291 ORTHO05D000879 3.4e-10 68.6 52 76.9
QL02p046816 Quercus lobata HOM05D000291 ORTHO05D000879 3.4e-10 68.6 85 54.1
Ca_21253_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 4.5e-10 68.2 47 76.6
COL.COLO4_07058 Corchorus olitorius HOM05D000291 ORTHO05D000879 4.5e-10 68.2 83 53.0
Lalb_Chr13g0300021 Lupinus albus HOM05D000291 ORTHO05D000879 5.8e-10 67.8 51 74.5
Psat1g145640 Pisum sativum HOM05D000291 ORTHO05D000879 5.8e-10 67.8 41 80.5
CsaV3_2G008710 Cucumis sativus L. HOM05D000291 ORTHO05D000879 1.0e-09 67.0 74 52.7
Gohir.A05G002400 Gossypium hirsutum HOM05D000291 ORTHO05D000879 1.0e-09 67.0 78 53.8
TPR.G5434 Trifolium pratense HOM05D000291 ORTHO05D000879 1.0e-09 67.0 50 70.0
Nitab4.5_0001995g0060 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.7e-09 66.2 58 60.3
MD16G1249100 Malus domestica HOM05D000291 ORTHO05D000879 2.2e-09 65.9 44 79.5
Glyma.15G165800 Glycine max HOM05D000291 ORTHO05D000879 2.9e-09 65.5 40 85.0
Gorai.009G002600 Gossypium raimondii HOM05D000291 ORTHO05D000879 2.9e-09 65.5 54 66.7
Oeu055539.1 Olea europaea HOM05D000291 ORTHO05D000879 2.9e-09 65.5 45 73.3
Psat4g013400 Pisum sativum HOM05D000291 ORTHO05D000879 3.8e-09 65.1 44 72.7
Cc00_g20360 Coffea canephora HOM05D000291 ORTHO05D000879 4.9e-09 64.7 59 64.4
Lalb_Chr11g0074781 Lupinus albus HOM05D000291 ORTHO05D000879 6.5e-09 64.3 50 74.0
Eucgr.C02326 Eucalyptus grandis HOM05D000291 ORTHO05D000879 8.4e-09 63.9 38 81.6
Medtr4g127440 Medicago truncatula HOM05D000291 ORTHO05D000879 1.4e-08 63.2 48 66.7
Aqoxy7G02793 Aquilegia oxysepala HOM05D000291 ORTHO05D000879 1.9e-08 62.8 76 50.0
Lj6g0024154 Lotus japonicus HOM05D000291 ORTHO05D000879 1.9e-08 62.8 40 80.0
PGR044G0232 Punica granatum HOM05D000291 ORTHO05D000879 1.9e-08 62.8 50 74.0
TPR.G9000 Trifolium pratense HOM05D000291 ORTHO05D000879 1.9e-08 62.8 45 71.1
MELO3C003976.2 Cucumis melo HOM05D000291 ORTHO05D000879 2.5e-08 62.4 74 52.7
Sc18g0004190 Simmondsia chinensis HOM05D000291 ORTHO05D000879 2.5e-08 62.4 74 47.3
Nitab4.5_0000018g0040 Nicotiana tabacum HOM05D000291 ORTHO05D000879 3.2e-08 62.0 44 68.2
TWI34G0787 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 3.2e-08 62.0 75 52.0
Peaxi162Scf00006g02414 Petunia axillaris HOM05D000291 ORTHO05D000879 4.2e-08 61.6 75 49.3
TWI63G0722 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 4.2e-08 61.6 81 51.9
Aa31LG3G13100 Aethionema arabicum HOM05D000291 ORTHO05D000879 5.5e-08 61.2 45 73.3
Ah.09g230230 Amaranthus hybridus HOM05D000291 ORTHO05D000879 5.5e-08 61.2 40 77.5
Gohir.D05G003000 Gossypium hirsutum HOM05D000291 ORTHO05D000879 5.5e-08 61.2 52 65.4
Hma1.2p1_0022F.1_g014490 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 5.5e-08 61.2 78 51.3
Sc14g0001450 Simmondsia chinensis HOM05D000291 ORTHO05D000879 5.5e-08 61.2 77 49.4
CAN.G306.5 Capsicum annuum HOM05D000291 ORTHO05D000879 7.1e-08 60.8 47 66.0
Prupe.1G075800 Prunus persica HOM05D000291 ORTHO05D000879 9.3e-08 60.5 40 80.0
CARHR270990 Cardamine hirsuta HOM05D000291 ORTHO05D000879 1.6e-07 59.7 42 73.8
Nn8g40788 Nelumbo nucifera HOM05D000291 ORTHO05D000879 1.6e-07 59.7 75 57.3
Thhalv10013043m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 2.1e-07 59.3 42 73.8
Glyma.09G059500 Glycine max HOM05D000291 ORTHO05D000879 2.1e-07 59.3 44 72.7
MD13G1242200 Malus domestica HOM05D000291 ORTHO05D000879 2.1e-07 59.3 42 73.8
Peaxi162Scf00124g00044 Petunia axillaris HOM05D000291 ORTHO05D000879 2.1e-07 59.3 77 49.4
Sed0015547 Sechium edule HOM05D000291 ORTHO05D000879 2.1e-07 59.3 73 50.7
BcaB08g36078 Brassica carinata HOM05D000291 ORTHO05D000879 2.7e-07 58.9 42 73.8
VMungo1309G2753 Vigna mungo HOM05D000291 ORTHO05D000879 2.7e-07 58.9 63 57.1
A10p14590 Brassica napus HOM05D000291 ORTHO05D000879 3.5e-07 58.5 42 73.8
BraA10t43546Z Brassica rapa HOM05D000291 ORTHO05D000879 3.5e-07 58.5 42 73.8
Nitab4.5_0001835g0010 Nicotiana tabacum HOM05D000291 ORTHO05D000879 3.5e-07 58.5 44 65.9
Sp7g23950 Schrenkiella parvula HOM05D000291 ORTHO05D000879 3.5e-07 58.5 72 47.2
MSTRG.26543 Avicennia marina HOM05D000291 ORTHO05D000879 4.6e-07 58.2 77 50.6
Carub.0008s1771 Capsella rubella HOM05D000291 ORTHO05D000879 4.6e-07 58.2 42 71.4
Migut.L01883 Erythranthe guttata HOM05D000291 ORTHO05D000879 6.0e-07 57.8 80 45.0
FAN07G2671 Fragaria x ananassa HOM05D000291 ORTHO05D000879 6.0e-07 57.8 41 75.6
FAN17G1456 Fragaria x ananassa HOM05D000291 ORTHO05D000879 6.0e-07 57.8 41 75.6
FAN22G1254 Fragaria x ananassa HOM05D000291 ORTHO05D000879 6.0e-07 57.8 41 75.6
MBI13_g34039_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D000879 6.0e-07 57.8 75 49.3
Hund09060 Selenicereus undatus HOM05D000291 ORTHO05D000879 6.0e-07 57.8 40 75.0
THA.LOC104817777 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 6.0e-07 57.8 35 80.0
A02p08660 Brassica napus HOM05D000291 ORTHO05D000879 7.9e-07 57.4 45 68.9
BraA02t05936Z Brassica rapa HOM05D000291 ORTHO05D000879 7.9e-07 57.4 45 68.9
Manes.14G158100 Manihot esculenta HOM05D000291 ORTHO05D000879 7.9e-07 57.4 44 75.0
Sp6g18930 Schrenkiella parvula HOM05D000291 ORTHO05D000879 7.9e-07 57.4 42 71.4
THA.LOC104811775 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 7.9e-07 57.4 45 68.9
AL7G27060 Arabidopsis lyrata HOM05D000291 ORTHO05D000879 1.3e-06 56.6 46 65.2
BcaB05g22327 Brassica carinata HOM05D000291 ORTHO05D000879 1.3e-06 56.6 35 77.1
FAN12G3828 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.3e-06 56.6 41 75.6
AL8G33170 Arabidopsis lyrata HOM05D000291 ORTHO05D000879 1.8e-06 56.2 42 69.0
arahy.Tifrunner.gnm1.ann1.W857VY Arachis hypogaea HOM05D000291 ORTHO05D000879 1.8e-06 56.2 52 67.3
BcaC04g19990 Brassica carinata HOM05D000291 ORTHO05D000879 1.8e-06 56.2 35 77.1
C09p49030 Brassica napus HOM05D000291 ORTHO05D000879 1.8e-06 56.2 35 77.1
BolC9t57754H Brassica oleracea HOM05D000291 ORTHO05D000879 1.8e-06 56.2 35 77.1
Ciclev10010653m.g Citrus clementina HOM05D000291 ORTHO05D000879 1.8e-06 56.2 52 63.5
AT5G57200 Arabidopsis thaliana HOM05D000291 ORTHO05D000879 2.3e-06 55.8 51 58.8
BcaC03g14175 Brassica carinata HOM05D000291 ORTHO05D000879 2.3e-06 55.8 42 71.4
C02p14500 Brassica napus HOM05D000291 ORTHO05D000879 2.3e-06 55.8 42 71.4
BolC2t07574H Brassica oleracea HOM05D000291 ORTHO05D000879 2.3e-06 55.8 42 71.4
FvH4_4g07320 Fragaria vesca HOM05D000291 ORTHO05D000879 2.3e-06 55.8 41 73.2
PSO063G1003 Papaver somniferum HOM05D000291 ORTHO05D000879 2.3e-06 55.8 38 78.9
PSO170G1249 Papaver somniferum HOM05D000291 ORTHO05D000879 2.3e-06 55.8 38 78.9
AT4G25940 Arabidopsis thaliana HOM05D000291 ORTHO05D000879 3.0e-06 55.5 33 78.8
arahy.Tifrunner.gnm1.ann1.M14RRE Arachis hypogaea HOM05D000291 ORTHO05D000879 5.1e-06 54.7 52 65.4
Rhsim01G0117200 Rhododendron simsii HOM05D000291 ORTHO05D000879 5.1e-06 54.7 35 74.3
Thhalv10024721m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 6.7e-06 54.3 46 63.0
PGSC0003DMG400014096 Solanum tuberosum HOM05D000291 ORTHO05D000879 6.7e-06 54.3 44 63.6
CANSAT11G2052 Cannabis sativa HOM05D000291 ORTHO05D000879 8.7e-06 53.9 49 61.2
CARHR233450 Cardamine hirsuta HOM05D000291 ORTHO05D000879 8.7e-06 53.9 33 75.8


User provided reference genes

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