Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-99 365.5 180 100.0
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-86 322.0 193 86.0
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-86 322.0 193 86.0
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-86 322.0 193 86.0
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.3e-85 317.0 193 84.5
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.6e-84 314.7 193 84.5
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.1e-83 311.2 193 83.9
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.3e-77 290.4 183 82.5
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.1e-72 275.0 193 75.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.3e-54 216.9 183 62.3
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.4e-53 213.4 183 65.0
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.9e-53 213.0 180 64.4
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 8.5e-38 161.0 180 52.2
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 8.5e-38 161.0 185 50.3
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 4.2e-37 158.7 179 49.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.2e-36 157.1 184 47.3
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.0e-35 154.1 184 51.1
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 1.0e-35 154.1 171 49.7
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 3.0e-35 152.5 184 47.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 4.0e-35 152.1 187 46.5
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.5e-34 150.2 192 45.3
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 3.1e-32 142.5 176 47.7
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.7e-31 139.4 171 44.4
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 2.7e-31 139.4 170 47.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 3.5e-31 139.0 181 45.3
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.5e-31 138.7 185 48.6
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.3e-30 137.1 184 43.5
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.7e-30 136.7 186 44.1
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.8e-30 135.6 186 44.1
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 5.0e-30 135.2 175 48.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.5e-29 133.7 185 48.6
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 1.9e-29 133.3 171 45.0
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 3.2e-29 132.5 179 44.7
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.2e-29 132.5 183 42.1
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.2e-29 132.5 176 44.3
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.2e-29 131.3 171 42.7
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 7.2e-29 131.3 171 42.7
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 3.6e-28 129.0 99 62.6
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 3.6e-28 129.0 179 45.3
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.6e-28 129.0 171 43.3
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 6.1e-28 128.3 108 58.3
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 6.1e-28 128.3 181 42.5
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 6.1e-28 128.3 181 42.5
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.0e-27 127.5 184 41.3
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.0e-27 127.5 171 42.7
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 6.8e-27 124.8 171 42.7
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.0e-26 123.2 88 63.6
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.6e-26 122.9 79 73.4
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 3.4e-26 122.5 184 41.3
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.4e-26 122.5 184 41.3
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 5.7e-26 121.7 171 49.1
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.3e-25 120.6 188 43.1
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.3e-25 120.6 175 41.1
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.7e-25 120.2 170 41.2
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.7e-25 119.0 174 41.4
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 3.7e-25 119.0 172 43.6
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.1e-24 117.5 172 41.3
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.1e-24 117.5 176 40.3
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.1e-24 117.5 171 42.1
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.1e-24 115.9 178 39.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 4.1e-24 115.5 171 39.2
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 5.4e-24 115.2 172 40.7
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.6e-23 113.6 170 42.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.7e-23 112.8 87 63.2
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 7.8e-23 111.3 188 39.9
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 6.6e-22 108.2 98 54.1
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 8.6e-22 107.8 81 65.4
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.1e-21 107.5 84 58.3
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 1.1e-21 107.5 98 54.1
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.1e-21 107.5 170 38.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-21 107.1 125 42.4
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.5e-21 107.1 171 40.4
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.5e-21 107.1 96 55.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.5e-21 106.3 172 39.0
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.5e-21 106.3 170 38.2
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 4.3e-21 105.5 171 39.8
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.5e-21 104.4 85 56.5
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 9.5e-21 104.4 87 58.6
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.2e-20 104.0 87 62.1
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.6e-20 103.6 85 57.6
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.6e-20 103.6 85 58.8
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.1e-20 103.2 85 57.6
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.1e-20 103.2 85 57.6
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.1e-20 103.2 170 37.6
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.1e-20 103.2 82 57.3
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 3.6e-20 102.4 84 59.5
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 6.1e-20 101.7 171 38.0
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 6.1e-20 101.7 85 56.5
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.4e-19 100.5 169 39.1
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.8e-19 100.1 77 62.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.0e-19 99.4 169 37.9
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 5.2e-19 98.6 87 56.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 8.9e-19 97.8 120 50.8
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.0e-18 96.7 61 77.0
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 3.4e-18 95.9 169 39.1
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 3.4e-18 95.9 96 46.9
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 7.5e-18 94.7 82 50.0
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.7e-17 93.6 77 53.2
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-17 93.2 104 42.3
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.2e-17 93.2 77 54.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.9e-17 92.8 77 53.2
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.9e-17 92.8 77 53.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.9e-17 92.8 77 53.2
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 6.4e-17 91.7 82 48.8
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 6.4e-17 91.7 171 37.4
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 8.3e-17 91.3 169 36.1
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 8.3e-17 91.3 171 35.7
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-16 90.9 169 34.3
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-16 90.9 82 46.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.1e-16 90.9 82 47.6
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.4e-16 90.5 82 47.6
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.4e-16 90.5 82 45.1
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.8e-16 90.1 80 53.8
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.4e-16 89.7 169 36.1
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.4e-16 89.7 169 34.3
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 5.4e-16 88.6 104 40.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 5.4e-16 88.6 104 40.4
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 5.4e-16 88.6 104 40.4
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 7.0e-16 88.2 78 52.6
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 7.0e-16 88.2 79 53.2
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 7.0e-16 88.2 82 46.3
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.2e-15 87.4 82 46.3
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-15 86.3 104 39.4
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.0e-14 84.3 82 46.3
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.7e-14 83.6 75 53.3
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.7e-14 83.6 78 48.7
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.7e-14 83.6 83 49.4
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.9e-14 82.4 84 50.0
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 5.6e-13 78.6 78 50.0
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 2.3e-11 73.2 169 32.5
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.3e-11 73.2 80 43.8
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.2e-10 70.9 78 50.0
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 4.4e-10 68.9 60 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 6.4e-09 65.1 84 42.9
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.2e-08 62.8 128 36.7
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 9.2e-08 61.2 46 60.9
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.0e-07 60.1 34 79.4
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 7.8e-07 58.2 148 35.1
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 6.6e-06 55.1 109 27.5


User provided reference genes

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