Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.8e-49 198.4 104 100.0
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 2.8e-17 92.0 98 52.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.8e-16 89.4 101 52.5
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 3.1e-16 88.6 95 55.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 5.3e-16 87.8 101 52.5
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 6.9e-16 87.4 94 55.3
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 5.0e-14 81.3 102 50.0
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 6.5e-14 80.9 101 52.5
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 8.5e-14 80.5 99 47.5
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.5e-14 80.5 100 49.0
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.1e-13 80.1 95 53.7
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.4e-13 79.7 102 45.1
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.4e-13 79.7 106 46.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 2.5e-13 79.0 101 47.5
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 2.5e-13 79.0 101 47.5
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.5e-13 79.0 94 52.1
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 2.5e-13 79.0 107 45.8
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 3.2e-13 78.6 109 48.6
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.2e-13 78.2 115 40.9
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 4.2e-13 78.2 96 49.0
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.5e-13 77.8 101 46.5
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.5e-13 77.8 108 45.4
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 7.2e-13 77.4 101 46.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 7.2e-13 77.4 101 46.5
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 7.2e-13 77.4 101 46.5
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 7.2e-13 77.4 99 44.4
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 9.4e-13 77.0 102 45.1
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 9.4e-13 77.0 97 49.5
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.6e-12 76.3 113 45.1
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.1e-12 75.9 108 47.2
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.7e-12 75.5 110 47.3
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.7e-12 75.5 107 47.7
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 3.6e-12 75.1 98 46.9
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.6e-12 75.1 109 45.0
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.6e-12 75.1 100 45.0
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.6e-12 75.1 113 45.1
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.6e-12 75.1 113 45.1
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 4.6e-12 74.7 105 47.6
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 6.1e-12 74.3 107 42.1
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 7.9e-12 73.9 97 51.5
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 7.9e-12 73.9 94 46.8
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 7.9e-12 73.9 106 44.3
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 7.9e-12 73.9 105 44.8
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 7.9e-12 73.9 105 47.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.0e-11 73.6 101 44.6
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.0e-11 73.6 102 43.1
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.0e-11 73.6 105 47.6
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.4e-11 73.2 95 50.5
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-11 73.2 108 43.5
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.4e-11 73.2 94 50.0
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.4e-11 73.2 100 45.0
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.8e-11 72.8 107 47.7
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.8e-11 72.8 107 46.7
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 1.8e-11 72.8 99 52.5
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.8e-11 72.8 103 41.7
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 2.3e-11 72.4 112 43.8
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.3e-11 72.4 101 44.6
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 2.3e-11 72.4 107 40.2
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.0e-11 72.0 93 45.2
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 3.0e-11 72.0 101 44.6
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.0e-11 72.0 115 40.9
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 3.0e-11 72.0 113 41.6
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.9e-11 71.6 99 41.4
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.9e-11 71.6 118 39.8
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-11 71.2 99 41.4
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-11 71.2 99 41.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 5.1e-11 71.2 99 41.4
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.1e-11 71.2 107 45.8
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 6.7e-11 70.9 103 44.7
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 8.8e-11 70.5 99 45.5
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.8e-11 70.5 109 40.4
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.8e-11 70.5 101 44.6
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 8.8e-11 70.5 101 44.6
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 1.1e-10 70.1 96 42.7
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 1.1e-10 70.1 108 44.4
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 1.5e-10 69.7 109 40.4
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 2.0e-10 69.3 101 40.6
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 2.0e-10 69.3 99 41.4
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 2.5e-10 68.9 125 36.8
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.5e-10 68.9 90 47.8
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 2.5e-10 68.9 93 43.0
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.5e-10 68.9 118 39.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 3.3e-10 68.6 101 41.6
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 3.3e-10 68.6 100 44.0
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 3.3e-10 68.6 100 44.0
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 4.3e-10 68.2 100 43.0
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 4.3e-10 68.2 126 36.5
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 4.3e-10 68.2 92 48.9
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 5.7e-10 67.8 99 39.4
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 9.7e-10 67.0 93 43.0
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 9.7e-10 67.0 114 40.4
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.3e-09 66.6 93 46.2
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.3e-09 66.6 101 39.6
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 1.7e-09 66.2 100 41.0
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 2.2e-09 65.9 114 41.2
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 2.2e-09 65.9 96 43.8
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.2e-09 65.9 99 43.4
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.8e-09 65.5 106 44.3
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.8e-09 65.5 100 45.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 3.7e-09 65.1 102 42.2
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.7e-09 65.1 106 44.3
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 4.8e-09 64.7 77 54.5
Glyma.05G140700 Glycine max HOM05D012904 ORTHO05D004090 4.8e-09 64.7 113 40.7
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 4.8e-09 64.7 96 41.7
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 6.3e-09 64.3 100 44.0
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 8.2e-09 63.9 100 40.0
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.2e-09 63.9 90 44.4
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 8.2e-09 63.9 97 40.2
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 1.1e-08 63.5 100 40.0
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 1.4e-08 63.2 100 44.0
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 1.8e-08 62.8 97 44.3
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.8e-08 62.8 91 47.3
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 3.1e-08 62.0 108 41.7
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 4.1e-08 61.6 102 39.2
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 4.1e-08 61.6 109 43.1
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 4.1e-08 61.6 94 44.7
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.3e-08 61.2 107 39.3
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 5.3e-08 61.2 101 38.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 6.9e-08 60.8 107 39.3
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 6.9e-08 60.8 107 39.3
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 9.1e-08 60.5 99 40.4
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 9.1e-08 60.5 107 39.3
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.2e-07 60.1 107 38.3
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-07 60.1 107 38.3
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.2e-07 60.1 107 38.3
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.2e-07 60.1 99 40.4
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.2e-07 60.1 106 43.4
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 1.5e-07 59.7 107 37.4
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 1.5e-07 59.7 107 37.4
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.5e-07 59.7 93 40.9
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.5e-07 59.7 93 40.9
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 1.5e-07 59.7 101 41.6
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 1.5e-07 59.7 91 45.1
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.0e-07 59.3 108 40.7
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 2.0e-07 59.3 111 36.0
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-07 58.9 99 39.4
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 2.6e-07 58.9 107 38.3
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.6e-07 58.9 98 37.8
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 3.4e-07 58.5 112 34.8
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 3.4e-07 58.5 97 39.2
TPR.G26259 Trifolium pratense HOM05D012904 ORTHO05D004090 3.4e-07 58.5 91 42.9
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 4.5e-07 58.2 97 40.2
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 4.5e-07 58.2 99 40.4
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 5.9e-07 57.8 32 87.5
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 7.7e-07 57.4 113 38.1
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.7e-07 57.4 107 34.6
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 1.3e-06 56.6 101 38.6
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 1.7e-06 56.2 103 38.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.7e-06 56.2 99 35.4
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.2e-06 55.8 94 41.5
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 2.2e-06 55.8 105 35.2
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.2e-06 55.8 99 38.4
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.9e-06 55.5 104 36.5
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.8e-06 55.1 100 37.0
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.8e-06 55.1 100 37.0
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.5e-06 54.3 99 35.4
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 6.5e-06 54.3 101 36.6
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 8.5e-06 53.9 98 35.7
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 8.5e-06 53.9 32 78.1
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 8.5e-06 53.9 32 78.1


User provided reference genes

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