Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.4e-58 228.0 108 100.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.2e-56 221.5 107 97.2
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.2e-56 221.1 107 97.2
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.2e-55 219.5 107 95.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-43 179.9 86 98.8
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.5e-39 164.9 86 88.4
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 7.9e-39 163.7 86 87.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.8e-38 162.5 96 80.2
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 6.7e-38 160.6 86 87.2
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.8e-36 155.2 85 83.5
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 3.7e-36 154.8 86 82.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 8.2e-36 153.7 85 81.2
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.1e-35 153.3 88 72.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.8e-35 152.5 85 80.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.1e-35 151.8 88 79.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.1e-35 151.8 89 73.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.5e-34 149.4 88 77.3
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.5e-34 147.9 86 77.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.0e-33 146.7 86 76.7
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.0e-33 146.7 86 79.1
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.0e-33 146.7 86 75.6
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.3e-33 146.4 99 67.7
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.3e-33 146.4 99 66.7
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.3e-33 146.4 88 77.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.7e-33 146.0 99 66.7
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.7e-33 146.0 88 77.3
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.7e-33 146.0 86 76.7
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.7e-33 146.0 86 74.4
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.7e-33 146.0 86 75.6
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.2e-33 145.6 86 75.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.9e-33 145.2 86 73.3
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.9e-33 145.2 86 73.3
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.9e-33 145.2 86 73.3
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.8e-33 144.8 88 67.0
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-33 144.8 86 73.3
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-33 144.8 86 73.3
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-33 144.8 86 73.3
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.8e-33 144.8 93 68.8
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 3.8e-33 144.8 101 60.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 5.0e-33 144.4 101 66.3
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 5.0e-33 144.4 88 72.7
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 5.0e-33 144.4 85 76.5
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 5.0e-33 144.4 85 78.8
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 5.0e-33 144.4 91 72.5
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 5.0e-33 144.4 91 72.5
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 6.5e-33 144.1 99 65.7
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 6.5e-33 144.1 99 65.7
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 6.5e-33 144.1 86 76.7
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 6.5e-33 144.1 99 68.7
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.5e-33 143.7 86 74.4
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 8.5e-33 143.7 86 74.4
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 1.1e-32 143.3 99 64.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.1e-32 143.3 86 77.9
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.4e-32 142.9 86 75.6
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-32 142.9 86 72.1
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-32 142.9 86 72.1
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.4e-32 142.9 85 74.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.9e-32 142.5 86 74.4
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.5e-32 142.1 104 64.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.5e-32 142.1 86 74.4
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.5e-32 142.1 88 73.9
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.5e-32 142.1 88 72.7
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 3.2e-32 141.7 86 73.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 3.2e-32 141.7 85 80.0
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 4.2e-32 141.4 86 73.3
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 4.2e-32 141.4 86 74.4
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.5e-32 141.0 110 66.4
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 7.2e-32 140.6 85 74.1
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 9.3e-32 140.2 96 67.7
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 9.3e-32 140.2 86 75.6
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 9.3e-32 140.2 85 71.8
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.6e-31 139.4 88 70.5
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.6e-31 139.4 88 70.5
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.6e-31 139.4 85 74.1
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.1e-31 139.0 86 72.1
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 2.1e-31 139.0 88 71.6
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.1e-31 139.0 86 72.1
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 3.6e-31 138.3 85 71.8
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.6e-31 137.9 88 70.5
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.6e-31 137.9 88 70.5
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 4.6e-31 137.9 101 63.4
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 6.1e-31 137.5 88 67.0
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.1e-31 137.5 85 74.1
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 7.9e-31 137.1 88 68.2
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 7.9e-31 137.1 86 72.1
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.0e-30 136.7 86 69.8
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.0e-30 136.7 85 69.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.4e-30 136.3 99 64.6
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.4e-30 136.3 86 69.8
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.4e-30 136.3 88 68.2
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.4e-30 136.3 84 73.8
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.4e-30 136.3 88 65.9
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.3e-30 135.6 85 71.8
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.0e-30 135.2 85 72.9
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 5.1e-30 134.4 88 68.2
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.1e-30 134.4 88 69.3
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-29 133.3 86 67.4
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.3e-29 131.7 84 71.4
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.4e-29 130.6 98 63.3
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 9.7e-29 130.2 97 62.9
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 2.8e-28 128.6 85 69.4
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.7e-28 128.3 88 69.3
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 2.4e-27 125.6 88 63.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.4e-27 125.6 99 58.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 9.1e-27 123.6 89 61.8
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.5e-26 122.9 98 64.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 7.7e-26 120.6 99 56.6
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.9e-25 118.6 78 64.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.2e-23 113.2 93 55.9
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-23 112.8 67 70.1
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 2.1e-23 112.5 93 58.1
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.7e-23 112.1 86 61.6
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-23 111.7 67 70.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 7.9e-23 110.5 79 60.8
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.0e-22 110.2 67 68.7
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.4e-22 109.8 78 61.5
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.8e-22 109.4 68 76.5
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.3e-22 109.0 101 48.5
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 6.7e-22 107.5 88 48.9
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.0e-21 105.9 70 70.0
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.4e-21 104.0 75 60.0
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 4.8e-20 101.3 64 70.3
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 6.3e-20 100.9 85 56.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 8.2e-20 100.5 88 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.8e-19 99.4 88 48.9
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-18 96.7 81 59.3
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.0e-17 93.6 71 63.4
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.7e-17 92.8 85 57.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 5.5e-16 87.8 73 57.5
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.2e-15 86.7 52 67.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.6e-15 86.3 53 64.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.7e-15 85.5 53 67.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.7e-15 85.5 88 43.2
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.7e-15 84.7 59 66.1
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.0e-14 83.6 49 75.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.4e-14 83.2 43 81.4
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 3.9e-14 81.6 54 64.8
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 3.9e-14 81.6 43 83.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 9.7e-13 77.0 50 68.0
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.6e-10 69.7 86 37.2
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 4.5e-10 68.2 61 50.8
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.5e-08 62.4 36 80.6
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 4.7e-07 58.2 85 34.1
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.3e-06 55.8 35 68.6


User provided reference genes

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