Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.8e-177 625.2 315 100.0
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 6.9e-160 567.4 327 87.2
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 5.9e-159 564.3 283 99.6
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 2.5e-154 548.9 326 83.4
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 5.9e-151 537.7 349 79.1
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.7e-150 536.2 315 84.4
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.0e-147 525.4 367 75.2
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 5.1e-147 524.6 315 82.2
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 3.3e-146 521.9 315 81.9
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 9.7e-146 520.4 315 82.2
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.4e-144 516.5 315 81.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-144 516.2 317 81.7
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.8e-144 516.2 316 80.1
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 3.1e-144 515.4 315 80.3
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 6.9e-144 514.2 315 80.3
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 9.1e-144 513.8 317 81.4
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.4e-143 511.9 315 80.0
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 3.4e-143 511.9 315 80.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 3.4e-143 511.9 316 80.4
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 4.5e-143 511.5 319 78.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.3e-142 510.0 317 79.8
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.7e-142 509.6 315 80.3
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 3.8e-142 508.4 314 80.3
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 6.5e-142 507.7 315 80.0
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 8.5e-142 507.3 315 79.0
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 8.5e-142 507.3 315 79.4
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 1.1e-141 506.9 319 79.0
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.4e-141 506.5 315 81.0
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 4.2e-141 505.0 316 79.1
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.5e-141 504.6 317 78.5
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 7.2e-141 504.2 317 78.9
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.6e-140 503.1 315 78.1
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.7e-140 502.3 306 81.0
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.7e-140 502.3 315 79.4
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 4.7e-140 501.5 315 78.7
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 4.7e-140 501.5 316 78.2
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 4.7e-140 501.5 318 78.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 6.1e-140 501.1 317 79.8
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 7.9e-140 500.7 325 78.2
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 7.9e-140 500.7 306 80.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.4e-139 500.0 306 80.7
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.2e-139 498.0 315 78.4
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.0e-138 496.1 319 77.4
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.3e-138 495.4 315 78.1
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 4.4e-138 495.0 319 77.4
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.7e-138 494.6 300 81.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 5.7e-138 494.6 300 80.0
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 9.7e-138 493.8 306 79.1
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.3e-137 493.4 316 78.2
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.7e-137 493.0 315 77.1
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 2.8e-137 492.3 311 78.5
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 3.7e-137 491.9 316 77.8
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 4.8e-137 491.5 315 77.8
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 6.3e-137 491.1 315 77.1
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.1e-136 490.3 315 77.1
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.4e-136 490.0 316 76.3
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.4e-136 489.2 309 78.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 3.1e-136 488.8 315 77.1
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 5.3e-136 488.0 316 76.3
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 3.5e-135 485.3 290 82.1
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 3.5e-135 485.3 372 68.3
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 7.7e-135 484.2 315 76.5
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.0e-134 483.8 315 76.8
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-134 483.0 316 77.5
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.2e-134 482.6 315 75.9
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.9e-134 482.3 335 72.8
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.0e-134 481.5 315 75.6
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.1e-133 480.3 306 76.1
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 4.2e-133 478.4 352 70.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 4.2e-133 478.4 306 76.5
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 9.4e-133 477.2 309 77.3
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.6e-132 476.5 304 76.6
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.1e-132 476.1 310 77.4
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.8e-131 473.0 306 75.5
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 5.2e-131 471.5 334 71.6
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.3e-130 468.8 311 72.7
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 7.5e-130 467.6 300 75.7
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.2e-129 466.1 316 75.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.8e-128 463.0 306 75.8
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-127 459.9 279 81.7
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 4.5e-127 458.4 303 71.3
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.0e-126 457.2 283 79.9
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 2.9e-126 455.7 303 71.9
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 9.4e-125 450.7 305 72.1
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 3.6e-124 448.7 286 78.7
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.6e-124 448.7 305 71.8
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 4.7e-124 448.4 309 70.2
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 2.0e-122 443.0 283 77.0
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 9.8e-122 440.7 303 70.3
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.2e-121 439.5 302 71.9
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.2e-121 439.5 302 71.9
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.8e-121 439.1 302 71.5
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 4.8e-121 438.3 302 71.9
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 8.3e-121 437.6 304 70.1
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.1e-120 437.2 301 70.8
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.4e-120 436.8 304 69.7
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.4e-120 436.8 301 70.4
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.4e-120 436.8 306 69.0
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 3.1e-120 435.6 302 71.2
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.7e-119 432.6 250 84.8
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.3e-118 430.3 303 68.6
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.7e-118 429.9 345 65.2
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.1e-117 427.2 308 65.3
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 3.0e-115 419.1 302 69.5
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.6e-111 406.8 307 68.4
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 2.0e-111 406.4 251 78.9
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-111 406.0 316 68.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 5.9e-111 404.8 345 62.3
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 8.6e-110 401.0 250 78.8
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.3e-109 398.7 310 68.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 7.3e-109 397.9 250 77.2
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.2e-100 368.2 313 64.2
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.7e-97 360.1 300 57.7
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 2.4e-96 356.3 316 62.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.2e-95 354.0 228 77.6
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-92 342.0 222 78.4
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 3.2e-88 329.3 235 72.3
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 9.6e-77 291.2 191 76.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.2e-76 290.8 208 70.7
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 4.4e-74 282.3 349 44.7
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.3e-73 280.8 186 74.2
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.2e-64 249.2 178 77.0
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.8e-60 236.5 165 73.9
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.1e-59 234.6 322 43.5
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-58 231.1 317 44.8
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-57 226.5 142 81.0
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.8e-51 207.2 324 39.5
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 4.9e-49 199.1 155 65.2
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 3.2e-40 169.9 100 84.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 2.7e-39 166.8 112 74.1
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 3.0e-38 163.3 117 65.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-31 141.0 176 48.9
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-28 130.6 91 70.3
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 4.5e-26 122.9 79 73.4
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.4e-24 117.9 303 33.0
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.2e-23 114.8 65 83.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-20 104.4 76 68.4
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.5e-16 90.5 57 77.2
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-13 80.9 103 47.6
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-13 79.0 81 51.9
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 3.8e-09 66.6 44 63.6


User provided reference genes

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