Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.5e-197 692.6 339 100.0
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.5e-184 649.4 333 96.1
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 2.0e-168 595.9 333 86.2
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.4e-166 589.7 333 84.7
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.9e-163 579.3 331 84.3
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 7.0e-150 534.3 329 76.9
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 5.9e-149 531.2 330 77.3
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.3e-148 530.0 331 75.5
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.2e-148 529.3 331 73.7
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.5e-147 526.6 326 74.2
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 5.5e-147 524.6 331 75.5
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 9.4e-147 523.9 359 72.4
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 9.4e-147 523.9 331 75.5
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 4.7e-146 521.5 331 73.7
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 8.0e-146 520.8 329 74.8
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.0e-145 520.4 326 74.5
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.8e-145 519.6 326 73.9
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 6.8e-145 517.7 331 74.3
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.5e-144 516.5 329 74.2
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 7.5e-144 514.2 328 74.4
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 9.8e-144 513.8 330 73.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.7e-143 513.1 330 73.6
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.7e-143 513.1 331 74.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.3e-143 510.8 328 73.8
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.4e-142 510.0 329 73.6
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 1.8e-142 509.6 333 73.6
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.1e-142 508.8 328 71.6
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.6e-141 506.5 328 74.7
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 2.0e-141 506.1 328 72.6
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 5.9e-141 504.6 329 71.4
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 5.9e-141 504.6 331 71.0
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 7.7e-141 504.2 349 68.5
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.7e-140 503.1 331 71.9
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 3.8e-140 501.9 329 72.9
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 4.2e-139 498.4 328 70.7
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.6e-138 496.5 343 68.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.6e-138 496.5 326 72.4
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.8e-138 495.7 329 72.0
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 6.1e-138 494.6 368 66.3
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 6.1e-138 494.6 331 71.3
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.8e-137 493.0 331 71.0
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.3e-137 492.7 328 70.1
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-136 489.6 330 72.4
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.6e-136 489.2 329 72.0
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 3.4e-136 488.8 325 70.8
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.7e-135 485.3 333 69.7
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 6.3e-135 484.6 328 69.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.8e-134 483.0 330 68.8
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.8e-134 483.0 333 69.4
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 2.4e-134 482.6 326 71.5
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.4e-134 482.6 330 70.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 7.0e-134 481.1 333 67.9
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 7.0e-134 481.1 330 68.5
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 9.2e-134 480.7 332 69.9
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 9.2e-134 480.7 332 69.6
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 9.2e-134 480.7 332 69.6
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.0e-132 477.2 328 69.2
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.7e-132 476.5 247 95.1
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 5.0e-132 474.9 328 70.4
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 5.0e-132 474.9 335 68.1
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.5e-131 473.4 328 70.4
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 3.3e-131 472.2 331 70.1
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 5.6e-131 471.5 331 67.4
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.6e-130 469.9 330 68.8
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 4.7e-130 468.4 329 68.4
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 6.1e-130 468.0 330 69.1
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 8.0e-130 467.6 331 68.0
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 2.3e-129 466.1 337 67.1
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 8.9e-129 464.2 331 67.1
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 2.6e-128 462.6 328 67.7
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 3.4e-128 462.2 331 66.8
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 7.5e-128 461.1 330 67.0
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 9.8e-128 460.7 329 67.5
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 2.2e-127 459.5 309 69.9
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.4e-126 456.8 331 67.1
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.9e-126 456.4 328 67.1
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 3.2e-126 455.7 331 65.9
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 4.1e-126 455.3 349 64.2
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.6e-125 453.4 329 66.3
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 2.0e-125 453.0 328 67.4
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 2.0e-125 453.0 328 67.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 2.0e-125 453.0 331 66.2
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.5e-125 452.2 329 66.3
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.7e-124 449.9 328 66.2
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 2.3e-124 449.5 325 66.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 4.3e-123 445.3 296 69.9
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 8.0e-122 441.0 332 64.8
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.4e-121 440.3 301 69.8
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 2.2e-119 433.0 281 72.2
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 2.9e-111 406.0 291 67.0
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.0e-104 383.3 241 75.9
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.3e-103 380.6 288 64.6
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.3e-103 380.6 285 65.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.2e-102 375.6 249 71.1
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 9.2e-102 374.4 281 64.1
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.1e-101 373.2 294 63.6
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 6.6e-100 368.2 241 73.0
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 4.7e-98 362.1 326 57.7
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 4.0e-97 359.0 247 68.8
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 7.6e-96 354.8 329 52.3
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 1.9e-94 350.1 242 68.6
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.0e-92 344.4 323 55.7
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 6.6e-92 341.7 213 74.6
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 4.3e-91 339.0 326 50.6
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.3e-87 327.4 237 66.7
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.8e-84 317.0 235 65.1
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 4.3e-83 312.4 349 49.9
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 4.8e-82 308.9 241 63.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 6.4e-79 298.5 295 50.8
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 6.4e-79 298.5 348 46.3
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-73 280.4 186 71.0
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 6.7e-60 235.3 378 37.3
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.0e-52 211.5 145 68.3
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.6e-48 196.8 243 44.4
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.0e-36 158.3 341 33.1
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 8.3e-34 148.7 95 72.6
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.2e-32 144.8 95 72.6
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 4.2e-30 136.3 90 67.8
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 4.0e-28 129.8 95 65.3
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 7.5e-27 125.6 95 64.2
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 2.8e-26 123.6 107 55.1
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.1e-25 121.7 82 69.5
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.7e-23 114.4 74 70.3
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.7e-23 114.4 360 27.5
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 2.3e-23 114.0 365 27.1
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 3.3e-22 110.2 94 57.4
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.0e-20 103.6 81 56.8
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 6.8e-20 102.4 361 27.1
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 9.8e-19 98.6 357 26.6
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.7e-18 96.7 360 27.8
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.4e-17 94.0 68 64.7
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.7e-15 87.8 53 71.7
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 3.5e-08 63.5 37 83.8


User provided reference genes

Program Settings