Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036912 Camellia sinensis var. sinensis HOM05D001906 ORTHO05D110988 1.1e-26 122.5 59 100.0
CSS0029127 Camellia sinensis var. sinensis HOM05D001906 ORTHO05D002083 4.5e-12 73.9 42 88.1
CSS0001551 Camellia sinensis var. sinensis HOM05D001906 ORTHO05D002083 3.8e-11 70.9 42 83.3
Actinidia11427 Actinidia chinensis HOM05D001906 ORTHO05D002083 3.2e-10 67.8 42 78.6
THA.LOC104800932 Tarenaya hassleriana HOM05D001906 ORTHO05D002083 4.2e-10 67.4 44 79.5
CAN.G85.4 Capsicum annuum HOM05D001906 ORTHO05D002083 7.2e-10 66.6 42 78.6
vmacro10999 Vaccinium macrocarpon HOM05D001906 ORTHO05D002083 7.2e-10 66.6 42 78.6
Hma1.2p1_0108F.1_g052160 Hydrangea macrophylla HOM05D001906 ORTHO05D002083 9.4e-10 66.2 42 76.2
Hma1.2p1_3519F.1_g336520 Hydrangea macrophylla HOM05D001906 ORTHO05D002083 9.4e-10 66.2 42 76.2
BcaC07g42124 Brassica carinata HOM05D001906 ORTHO05D002083 1.2e-09 65.9 44 70.5
A09p67350 Brassica napus HOM05D001906 ORTHO05D002083 1.2e-09 65.9 44 70.5
C08p51660 Brassica napus HOM05D001906 ORTHO05D002083 1.2e-09 65.9 44 70.5
BolC8t52694H Brassica oleracea HOM05D001906 ORTHO05D002083 1.2e-09 65.9 44 70.5
BraA09t42066Z Brassica rapa HOM05D001906 ORTHO05D002083 1.2e-09 65.9 44 70.5
Oeu022911.1 Olea europaea HOM05D001906 ORTHO05D002083 1.2e-09 65.9 42 76.2
Peaxi162Scf00057g02317 Petunia axillaris HOM05D001906 ORTHO05D002083 1.2e-09 65.9 42 76.2
GSVIVG01038253001 Vitis vinifera HOM05D001906 ORTHO05D002083 1.2e-09 65.9 42 73.8
Nitab4.5_0002789g0020 Nicotiana tabacum HOM05D001906 ORTHO05D002083 1.6e-09 65.5 42 76.2
Cfa008517 Carpinus fangiana HOM05D001906 ORTHO05D002083 2.1e-09 65.1 42 71.4
Cc03_g15930 Coffea canephora HOM05D001906 ORTHO05D002083 2.7e-09 64.7 42 73.8
Dinv13679 Davidia involucrata HOM05D001906 ORTHO05D002083 2.7e-09 64.7 42 73.8
Sopen12g009200 Solanum pennellii HOM05D001906 ORTHO05D002083 2.7e-09 64.7 42 76.2
Thecc.05G001500 Theobroma cacao HOM05D001906 ORTHO05D002083 2.7e-09 64.7 42 71.4
CiPaw.01G201900 Carya illinoinensis HOM05D001906 ORTHO05D002083 3.6e-09 64.3 42 71.4
TWI63G1548 Tripterygium wilfordii HOM05D001906 ORTHO05D002083 3.6e-09 64.3 42 69.0
Ciclev10023374m.g Citrus clementina HOM05D001906 ORTHO05D002083 4.7e-09 63.9 44 70.5
MD15G1142900 Malus domestica HOM05D001906 ORTHO05D002083 4.7e-09 63.9 42 71.4
Nitab4.5_0000160g0170 Nicotiana tabacum HOM05D001906 ORTHO05D002083 4.7e-09 63.9 42 76.2
Rhsim02G0168400 Rhododendron simsii HOM05D001906 ORTHO05D002083 4.7e-09 63.9 36 88.9
Sp1g04470 Schrenkiella parvula HOM05D001906 ORTHO05D002083 4.7e-09 63.9 44 68.2
CANSAT56G4061 Cannabis sativa HOM05D001906 ORTHO05D002083 6.1e-09 63.5 41 70.7
FAN23G1185 Fragaria x ananassa HOM05D001906 ORTHO05D002083 6.1e-09 63.5 42 71.4
Peaxi162Scf00169g00915 Petunia axillaris HOM05D001906 ORTHO05D002083 6.1e-09 63.5 42 73.8
THA.LOC104826179 Tarenaya hassleriana HOM05D001906 ORTHO05D002083 6.1e-09 63.5 44 70.5
Aa31LG1G19020 Aethionema arabicum HOM05D001906 ORTHO05D002083 7.9e-09 63.2 44 68.2
Duzib093G0276 Durio zibethinus HOM05D001906 ORTHO05D002083 7.9e-09 63.2 40 72.5
Prupe.7G270100 Prunus persica HOM05D001906 ORTHO05D002083 7.9e-09 63.2 42 71.4
Solyc12g018990.2 Solanum lycopersicum HOM05D001906 ORTHO05D002083 7.9e-09 63.2 42 73.8
BcaB03g13452 Brassica carinata HOM05D001906 ORTHO05D002083 1.0e-08 62.8 44 68.2
BcaC07g36829 Brassica carinata HOM05D001906 ORTHO05D002083 1.0e-08 62.8 44 68.2
A08p36380 Brassica napus HOM05D001906 ORTHO05D002083 1.0e-08 62.8 44 68.2
C08p02000 Brassica napus HOM05D001906 ORTHO05D002083 1.0e-08 62.8 44 68.2
BolC8t46998H Brassica oleracea HOM05D001906 ORTHO05D002083 1.0e-08 62.8 44 68.2
BraA08t35542Z Brassica rapa HOM05D001906 ORTHO05D002083 1.0e-08 62.8 44 68.2
FvH4_1g00210 Fragaria vesca HOM05D001906 ORTHO05D002083 1.0e-08 62.8 42 71.4
FAN28G0989 Fragaria x ananassa HOM05D001906 ORTHO05D002083 1.0e-08 62.8 42 71.4
CiPaw.02G125000 Carya illinoinensis HOM05D001906 ORTHO05D002083 1.4e-08 62.4 37 81.1
MELO3C020468.2 Cucumis melo HOM05D001906 ORTHO05D002083 1.4e-08 62.4 42 66.7
CsaV3_2G011370 Cucumis sativus L. HOM05D001906 ORTHO05D002083 1.4e-08 62.4 42 66.7
Gorai.012G120100 Gossypium raimondii HOM05D001906 ORTHO05D002083 1.4e-08 62.4 42 69.0
Potri.007G144600 Populus trichocarpa HOM05D001906 ORTHO05D002083 1.4e-08 62.4 44 68.2
QL03p037848 Quercus lobata HOM05D001906 ORTHO05D002083 1.4e-08 62.4 41 68.3
QL10p064438 Quercus lobata HOM05D001906 ORTHO05D002083 1.4e-08 62.4 41 68.3
QL10p064578 Quercus lobata HOM05D001906 ORTHO05D002083 1.4e-08 62.4 41 68.3
QL10p065704 Quercus lobata HOM05D001906 ORTHO05D002083 1.4e-08 62.4 41 68.3
RcHm_v2.0_Chr2g0084501 Rosa chinensis HOM05D001906 ORTHO05D002083 1.8e-08 62.0 42 69.0
SalBow6G1015 Salvia bowleyana HOM05D001906 ORTHO05D002083 1.8e-08 62.0 42 71.4
Glyma.09G285900 Glycine max HOM05D001906 ORTHO05D002083 3.0e-08 61.2 42 66.7
Hund22677 Selenicereus undatus HOM05D001906 ORTHO05D002083 3.0e-08 61.2 42 66.7
MSTRG.24548 Avicennia marina HOM05D001906 ORTHO05D002083 3.9e-08 60.8 42 69.0
Gohir.D04G136250 Gossypium hirsutum HOM05D001906 ORTHO05D002083 3.9e-08 60.8 42 66.7
Gohir.D04G136300 Gossypium hirsutum HOM05D001906 ORTHO05D002083 3.9e-08 60.8 42 66.7
Manes.05G207000 Manihot esculenta HOM05D001906 ORTHO05D002083 3.9e-08 60.8 42 69.0
TAR365G0837 Trochodendron aralioides HOM05D001906 ORTHO05D002083 3.9e-08 60.8 42 71.4
Thhalv10008223m.g Eutrema salsugineum HOM05D001906 ORTHO05D002083 5.1e-08 60.5 44 63.6
Glyma.20G000200 Glycine max HOM05D001906 ORTHO05D002083 5.1e-08 60.5 42 66.7
MD00G1087000 Malus domestica HOM05D001906 ORTHO05D002083 5.1e-08 60.5 42 69.0
PGR042G0230 Punica granatum HOM05D001906 ORTHO05D002083 5.1e-08 60.5 42 71.4
TAR362G0150 Trochodendron aralioides HOM05D001906 ORTHO05D002083 5.1e-08 60.5 42 69.0
Gohir.A04G096500 Gossypium hirsutum HOM05D001906 ORTHO05D002083 6.7e-08 60.1 42 66.7
Gohir.A07G161405 Gossypium hirsutum HOM05D001906 ORTHO05D002083 6.7e-08 60.1 42 64.3
Lj1A1221G57 Lonicera japonica HOM05D001906 ORTHO05D002083 6.7e-08 60.1 42 69.0
CAN.G566.41 Capsicum annuum HOM05D001906 ORTHO05D002083 8.8e-08 59.7 54 59.3
Lalb_Chr04g0259061 Lupinus albus HOM05D001906 ORTHO05D002083 8.8e-08 59.7 42 66.7
EL10Ac6g13246 Beta vulgaris HOM05D001906 ORTHO05D002083 1.1e-07 59.3 42 64.3
Cpa.g.sc151.9 Carica papaya HOM05D001906 ORTHO05D002083 1.1e-07 59.3 40 65.0
AUR62005825 Chenopodium quinoa HOM05D001906 ORTHO05D002083 1.1e-07 59.3 38 71.1
AUR62032819 Chenopodium quinoa HOM05D001906 ORTHO05D002083 1.1e-07 59.3 38 71.1
Haze_11127 Corylus avellana HOM05D001906 ORTHO05D002083 1.1e-07 59.3 42 66.7
Eucgr.A00423 Eucalyptus grandis HOM05D001906 ORTHO05D002083 1.1e-07 59.3 42 66.7
Lj2g0019610 Lotus japonicus HOM05D001906 ORTHO05D002083 1.1e-07 59.3 37 75.7
Sed0010371 Sechium edule HOM05D001906 ORTHO05D002083 1.1e-07 59.3 42 64.3
PGSC0003DMG400029360 Solanum tuberosum HOM05D001906 ORTHO05D002083 1.1e-07 59.3 42 66.7
Phvul.003G000600 Phaseolus vulgaris HOM05D001906 ORTHO05D002083 1.5e-07 58.9 44 63.6
SGA_v2.0_scaffold19G08891 Striga asiatica HOM05D001906 ORTHO05D002083 1.5e-07 58.9 42 69.0
Carub.0001s0496 Capsella rubella HOM05D001906 ORTHO05D002083 2.0e-07 58.5 44 61.4
Gohir.A06G135900 Gossypium hirsutum HOM05D001906 ORTHO05D002083 2.0e-07 58.5 42 64.3
Lsat_1_v5_gn_5_147161 Lactuca sativa HOM05D001906 ORTHO05D002083 2.0e-07 58.5 42 66.7
Nn7g37451 Nelumbo nucifera HOM05D001906 ORTHO05D002083 2.0e-07 58.5 42 61.9
AT1G05620 Arabidopsis thaliana HOM05D001906 ORTHO05D002083 2.6e-07 58.2 44 61.4
AL1G15530 Arabidopsis lyrata HOM05D001906 ORTHO05D002083 3.3e-07 57.8 44 61.4
CiPaw.02G091300 Carya illinoinensis HOM05D001906 ORTHO05D002083 4.4e-07 57.4 55 56.4
Eucgr.A00425 Eucalyptus grandis HOM05D001906 ORTHO05D002083 4.4e-07 57.4 42 64.3
HanXRQChr05g0134781 Helianthus annuus HOM05D001906 ORTHO05D002083 5.7e-07 57.0 38 71.1
HanXRQChr10g0294301 Helianthus annuus HOM05D001906 ORTHO05D002083 5.7e-07 57.0 38 71.1
Sc19g0002400 Simmondsia chinensis HOM05D001906 ORTHO05D002083 5.7e-07 57.0 42 59.5
unitig_744.g24308 Utricularia gibba HOM05D001906 ORTHO05D002083 9.7e-07 56.2 39 64.1
Atru.chr1.3689 Acer truncatum HOM05D001906 ORTHO05D002083 1.3e-06 55.8 37 70.3
Atru.chr3.1972 Acer truncatum HOM05D001906 ORTHO05D002083 1.3e-06 55.8 37 70.3
Atru.chr3.1982 Acer truncatum HOM05D001906 ORTHO05D002083 1.3e-06 55.8 37 70.3
Ah.03g134810 Amaranthus hybridus HOM05D001906 ORTHO05D002083 1.3e-06 55.8 49 59.2
arahy.Tifrunner.gnm1.ann1.3C89HC Arachis hypogaea HOM05D001906 ORTHO05D002083 1.3e-06 55.8 36 69.4
HanXRQChr05g0134641 Helianthus annuus HOM05D001906 ORTHO05D002083 1.3e-06 55.8 38 68.4
HanXRQChr05g0134651 Helianthus annuus HOM05D001906 ORTHO05D002083 1.3e-06 55.8 38 68.4
HanXRQChr05g0134791 Helianthus annuus HOM05D001906 ORTHO05D002083 1.3e-06 55.8 38 68.4
Eucgr.A00427 Eucalyptus grandis HOM05D001906 ORTHO05D002083 1.7e-06 55.5 42 64.3
ECA234G3509 Erigeron canadensis HOM05D001906 ORTHO05D002083 2.2e-06 55.1 38 65.8
PSO675G8186 Papaver somniferum HOM05D001906 ORTHO05D002083 2.2e-06 55.1 37 73.0
Sopen12g032460 Solanum pennellii HOM05D001906 ORTHO05D002083 2.2e-06 55.1 41 61.0
Migut.N03025 Erythranthe guttata HOM05D001906 ORTHO05D002083 2.8e-06 54.7 42 64.3
Medtr1g039400 Medicago truncatula HOM05D001906 ORTHO05D002083 2.8e-06 54.7 35 71.4
PSO732G0514 Papaver somniferum HOM05D001906 ORTHO05D002083 2.8e-06 54.7 37 73.0
TPR.G39840 Trifolium pratense HOM05D001906 ORTHO05D002083 2.8e-06 54.7 32 78.1
Psat6g101560 Pisum sativum HOM05D001906 ORTHO05D002083 3.7e-06 54.3 38 65.8
MBI10_g25981_MAGBIO Magnolia biondii HOM05D001906 ORTHO05D002083 4.8e-06 53.9 39 66.7
Medtr1g039410 Medicago truncatula HOM05D001906 ORTHO05D002083 6.3e-06 53.5 38 63.2
Os03g0425200 Oryza sativa ssp. japonica HOM05D001906 ORTHO05D002083 8.2e-06 53.1 36 61.1


User provided reference genes

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