Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.3e-158 561.6 360 100.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.3e-106 389.8 345 69.3
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.3e-105 386.0 343 69.1
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 2.2e-101 373.2 366 63.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.9e-100 370.2 291 76.3
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.4e-95 354.0 340 62.4
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 4.9e-93 345.5 352 65.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 9.2e-92 341.3 354 62.4
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 3.0e-90 336.3 351 63.8
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.1e-89 334.3 341 61.3
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.9e-89 333.6 350 62.9
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.6e-88 330.5 347 61.7
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.1e-88 330.1 348 61.5
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 6.8e-87 325.1 346 65.6
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 8.9e-87 324.7 390 57.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 4.1e-84 315.8 342 64.3
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.1e-83 313.5 340 59.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.9e-82 309.3 340 59.7
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.9e-82 309.3 348 57.5
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 5.1e-82 308.9 341 63.9
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.6e-82 308.5 340 54.1
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 9.6e-81 304.7 336 57.4
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.6e-81 304.7 344 54.4
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.1e-79 301.2 336 56.8
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-79 301.2 342 61.4
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 5.2e-79 298.9 339 61.9
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.5e-78 297.4 350 60.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 7.6e-78 295.0 345 58.8
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.6e-78 295.0 347 58.8
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 7.6e-78 295.0 346 61.0
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 9.9e-78 294.7 339 59.9
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.3e-77 294.3 332 70.2
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 4.9e-77 292.4 346 59.8
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 6.4e-77 292.0 348 62.1
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.4e-76 290.8 346 58.7
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.7e-75 286.6 284 64.4
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.6e-75 285.8 341 56.0
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 6.0e-75 285.4 342 58.8
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 3.9e-74 282.7 346 57.2
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 5.1e-74 282.3 341 56.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.1e-74 282.3 344 58.4
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.1e-73 281.2 337 60.5
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.6e-73 278.9 337 60.2
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 5.6e-73 278.9 352 56.2
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.3e-73 278.5 336 59.2
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 9.6e-73 278.1 344 50.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.8e-72 276.6 345 54.5
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.8e-72 276.6 345 55.9
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.8e-72 276.6 289 58.8
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.1e-71 274.6 343 54.8
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 4.0e-71 272.7 356 50.8
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 5.3e-71 272.3 350 54.9
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 6.9e-71 271.9 347 56.2
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.0e-71 271.6 353 57.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 4.4e-70 269.2 336 47.9
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 5.8e-70 268.9 332 53.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.7e-69 267.3 349 54.7
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 3.8e-69 266.2 301 55.5
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.9e-69 265.8 344 58.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.4e-68 264.2 336 47.9
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.4e-68 263.5 516 43.2
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 4.2e-68 262.7 342 48.5
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 7.1e-68 261.9 342 53.2
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.2e-67 261.2 341 58.9
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 4.6e-67 259.2 338 57.7
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.6e-67 259.2 338 53.8
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.0e-66 258.1 302 52.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 2.3e-66 256.9 343 60.1
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.5e-65 253.4 346 51.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.6e-64 250.8 343 55.7
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.1e-64 250.4 339 49.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.1e-64 250.4 340 50.3
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 4.8e-64 249.2 356 48.9
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.1e-63 248.1 446 43.7
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.8e-63 247.3 259 74.1
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.5e-62 244.2 342 55.8
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 5.8e-62 242.3 352 46.9
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 3.0e-58 229.9 325 59.1
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 8.7e-58 228.4 263 60.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.1e-57 228.0 291 56.0
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.3e-57 226.1 332 48.2
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.6e-56 224.2 351 43.9
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 4.8e-56 222.6 341 47.2
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 8.1e-56 221.9 342 49.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.1e-55 221.5 321 52.3
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.3e-55 219.2 294 55.4
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.6e-54 216.9 341 41.3
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.3e-53 214.5 322 50.9
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 6.5e-53 212.2 357 44.3
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 5.5e-52 209.1 306 44.1
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 9.3e-52 208.4 293 51.9
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.6e-51 207.6 340 42.1
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.0e-50 204.9 340 42.4
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.5e-49 201.1 315 49.2
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.9e-49 200.7 354 47.5
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 4.8e-48 196.1 348 44.8
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.4e-47 194.5 344 41.6
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-47 194.1 348 41.4
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.4e-47 193.7 338 40.5
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.9e-47 192.2 242 50.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 3.4e-46 189.9 251 53.8
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 5.9e-46 189.1 350 39.4
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.0e-45 188.3 349 40.1
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.0e-45 188.3 271 53.9
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.0e-45 188.3 336 40.5
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.8e-45 186.4 254 51.2
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.5e-45 185.7 119 81.5
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 7.9e-43 178.7 344 41.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 7.9e-43 178.7 348 35.9
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.3e-42 177.2 315 40.6
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.5e-41 174.5 341 36.7
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.8e-40 170.2 347 34.9
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.8e-40 170.2 347 34.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 5.9e-38 162.5 307 38.4
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.9e-36 157.5 337 40.4
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.9e-34 149.8 122 69.7
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 3.9e-34 149.8 317 34.1
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.1e-33 148.3 349 36.1
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.0e-33 147.5 348 33.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 5.7e-33 146.0 295 35.6
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.7e-32 143.3 348 31.6
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.1e-31 141.7 341 32.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.6e-27 127.9 265 53.2
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.6e-27 127.9 302 33.1
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 4.7e-27 126.3 336 32.1
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.8e-24 117.1 206 37.9
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.7e-24 116.7 311 31.8
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 4.8e-24 116.3 79 75.9
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 6.5e-21 105.9 101 56.4
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 5.5e-20 102.8 339 31.9
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 2.7e-19 100.5 302 36.4
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 4.7e-19 99.8 107 57.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 6.7e-18 95.9 339 29.5
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 6.7e-18 95.9 93 54.8
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 3.3e-17 93.6 75 64.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 7.5e-17 92.4 211 31.3
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-16 91.7 134 42.5
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.2e-16 90.9 90 63.3
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.4e-15 88.2 269 30.5
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.5e-12 78.2 197 39.1
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.2e-12 77.0 93 47.3
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.8e-07 61.2 91 37.4
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 2.4e-07 60.8 45 60.0


User provided reference genes

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