Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.4e-268 927.5 522 100.0
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 2.2e-203 712.6 525 78.7
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.3e-200 702.6 524 77.1
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 2.8e-198 695.7 486 77.8
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 9.6e-191 670.6 528 74.2
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 5.5e-186 654.8 510 71.6
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 7.4e-183 644.4 481 73.4
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.3e-182 643.7 481 73.4
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.1e-181 640.6 524 71.9
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 4.5e-180 635.2 489 72.0
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 5.8e-180 634.8 485 72.0
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 3.8e-179 632.1 485 71.8
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 3.2e-178 629.0 486 71.2
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 7.1e-178 627.9 498 71.5
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.6e-177 626.7 531 71.2
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 6.7e-176 621.3 485 69.9
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 1.1e-175 620.5 472 72.9
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.3e-175 618.6 525 66.3
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 7.4e-175 617.8 486 69.8
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.1e-173 614.0 485 70.7
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.4e-173 613.6 485 69.9
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 1.8e-173 613.2 525 65.7
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 2.4e-173 612.8 528 66.7
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 3.1e-173 612.5 485 70.7
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 5.3e-173 611.7 461 72.9
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.6e-172 609.4 484 71.3
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 3.8e-171 605.5 523 64.1
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 3.8e-171 605.5 485 70.9
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.0e-171 605.1 485 70.7
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 3.2e-170 602.4 533 64.4
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 3.6e-169 599.0 467 72.2
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.0e-168 597.4 486 68.3
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 2.3e-168 596.3 501 68.1
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.9e-168 595.5 473 70.8
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 5.1e-168 595.1 610 60.0
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 1.1e-167 594.0 486 67.7
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.5e-167 593.6 524 63.4
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 7.4e-167 591.3 487 69.0
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 2.2e-166 589.7 523 62.3
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 4.8e-166 588.6 485 68.2
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.2e-164 583.9 485 66.0
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.2e-164 583.9 483 67.3
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 4.5e-164 582.0 484 67.8
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.5e-164 582.0 483 65.6
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 3.8e-163 578.9 485 66.2
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.1e-162 577.4 510 65.3
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 1.1e-162 577.4 469 68.4
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 4.2e-162 575.5 487 66.5
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.5e-162 575.1 510 65.1
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 1.6e-161 573.5 416 74.5
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 3.6e-161 572.4 479 65.6
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.8e-160 570.1 531 65.3
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 2.6e-159 566.2 473 67.9
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.3e-159 565.8 492 64.6
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 5.7e-159 565.1 454 69.8
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.7e-158 563.5 479 66.0
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 2.2e-158 563.1 484 64.5
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 7.0e-157 558.1 451 69.4
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 7.7e-156 554.7 413 70.9
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 2.2e-155 553.1 478 63.6
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 3.8e-155 552.4 478 63.8
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 5.0e-155 552.0 475 66.9
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.4e-154 550.4 419 71.4
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 1.2e-153 547.4 487 63.7
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 1.2e-153 547.4 487 63.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.6e-153 545.8 474 66.0
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 1.0e-152 544.3 487 65.1
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 3.0e-152 542.7 484 64.0
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.6e-151 539.7 488 63.7
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 3.7e-150 535.8 390 73.1
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 3.7e-150 535.8 524 59.7
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 4.8e-150 535.4 507 61.1
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.1e-149 534.3 488 63.1
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.4e-149 533.9 478 62.1
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 1.8e-149 533.5 488 62.3
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.1e-149 532.7 412 71.1
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 2.6e-148 529.6 487 62.2
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 1.7e-147 526.9 525 59.2
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.2e-147 526.6 478 61.5
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.9e-147 526.2 413 70.2
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 2.5e-146 523.1 483 62.3
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 6.1e-145 518.5 497 60.6
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 1.4e-144 517.3 487 60.6
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.4e-144 517.3 488 61.7
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.4e-144 517.3 475 63.2
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 4.0e-144 515.8 484 60.1
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 4.0e-144 515.8 501 59.9
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 2.0e-143 513.5 486 60.3
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.7e-142 510.4 391 69.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 8.3e-142 508.1 501 58.7
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.1e-141 507.7 494 58.9
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.1e-141 507.7 494 58.9
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.6e-140 503.8 521 59.3
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 2.9e-139 499.6 404 67.1
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 5.0e-139 498.8 514 58.0
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 8.5e-139 498.0 414 66.7
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 2.7e-137 493.0 409 64.5
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.0e-136 491.1 423 63.8
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 3.0e-136 489.6 482 58.5
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.0e-135 486.9 483 58.4
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 9.8e-135 484.6 472 56.8
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.4e-133 480.7 362 73.8
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 7.0e-133 478.4 403 66.7
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 2.9e-131 473.0 389 66.3
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 1.9e-130 470.3 445 58.2
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 1.4e-128 464.2 528 58.9
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 5.7e-127 458.8 393 63.1
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 2.8e-121 439.9 362 66.9
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.2e-119 434.5 512 50.8
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.7e-118 430.6 401 62.6
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 2.7e-116 423.3 343 70.8
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.1e-113 413.7 380 59.2
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.2e-108 397.9 493 49.7
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.7e-102 376.3 387 62.8
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 4.6e-100 369.4 314 62.1
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.8e-96 357.5 496 43.1
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.7e-94 350.9 329 68.1
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-93 348.2 276 68.1
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 3.2e-93 346.7 276 67.8
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.6e-92 344.4 325 62.5
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 4.6e-92 342.8 483 44.5
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 7.1e-85 318.9 288 58.7
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 2.7e-84 317.0 273 68.5
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 2.5e-82 310.5 476 45.6
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.8e-81 307.0 232 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 4.0e-80 303.1 504 40.5
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 3.2e-77 293.5 591 39.1
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.3e-75 288.1 307 55.4
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 1.3e-65 255.0 177 75.1
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 1.2e-52 211.8 189 69.8
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 4.1e-48 196.8 159 66.0
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 4.2e-45 186.8 162 63.0
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 4.7e-44 183.3 144 67.4
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 6.5e-38 162.9 109 75.2
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 4.1e-32 143.7 159 59.7
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 5.9e-31 139.8 180 51.7
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 1.7e-30 138.3 108 69.4
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 1.7e-30 138.3 108 69.4
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.0e-27 127.1 131 58.8
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 5.2e-27 126.7 170 52.4
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.3e-25 122.1 126 54.0
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 1.3e-22 112.1 136 57.4
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.6e-20 105.1 75 76.0
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 6.1e-20 103.2 199 41.2
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.3e-19 101.3 95 62.1
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.0e-19 100.9 146 47.9
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.0e-19 100.5 151 47.7
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 2.0e-18 98.2 70 78.6
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.6e-18 97.8 145 46.2
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 4.9e-17 93.6 110 53.6
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 2.4e-16 91.3 107 45.8
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 3.1e-16 90.9 114 56.1
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 1.6e-15 88.6 82 58.5
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 2.0e-15 88.2 56 71.4
CAN.G322.73 Capsicum annuum HOM05D004816 ORTHO05D006043 4.9e-09 67.0 66 69.7
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 8.3e-09 66.2 254 30.3
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.3e-06 58.9 99 51.5


User provided reference genes

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