Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.2e-287 991.5 459 100.0
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 6.1e-258 893.6 445 91.9
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.2e-256 889.4 456 88.8
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.1e-254 882.9 473 86.0
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.2e-254 881.3 453 88.5
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.2e-253 879.4 450 88.9
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 3.9e-252 874.4 454 87.0
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.5e-251 872.5 449 87.5
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 3.3e-251 871.3 445 87.9
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 5.6e-251 870.5 454 86.6
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 9.5e-251 869.8 454 86.3
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 2.8e-250 868.2 448 87.5
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 6.2e-250 867.1 455 86.2
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 7.5e-248 860.1 452 86.1
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.7e-247 857.8 449 85.5
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 8.3e-247 856.7 446 86.8
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 8.3e-247 856.7 438 87.7
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.9e-246 855.5 449 85.5
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.1e-246 854.4 435 88.5
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 5.4e-246 854.0 449 85.1
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.2e-245 852.8 451 86.3
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 2.0e-245 852.0 445 86.3
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.0e-244 849.7 449 84.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.0e-244 849.7 446 85.0
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.3e-244 849.4 453 85.0
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.3e-244 848.6 469 83.8
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 2.3e-244 848.6 447 85.5
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 3.0e-244 848.2 493 79.7
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 3.0e-244 848.2 493 79.7
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.1e-243 846.3 445 84.9
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.5e-243 845.9 435 87.1
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.1e-242 842.0 453 84.5
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 2.1e-242 842.0 456 83.6
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.8e-242 841.6 445 84.5
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 8.1e-242 840.1 445 84.9
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.1e-241 839.7 437 86.3
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 1.4e-241 839.3 484 80.4
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.5e-240 835.9 451 82.3
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 1.5e-240 835.9 456 83.6
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 2.0e-240 835.5 440 85.2
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 5.8e-240 833.9 451 83.1
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-239 832.8 455 81.8
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.2e-239 832.0 434 85.5
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 2.9e-239 831.6 441 83.7
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.9e-239 831.6 455 82.2
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.9e-239 830.9 438 84.7
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 8.3e-239 830.1 438 84.7
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.1e-238 829.7 431 85.4
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 1.4e-238 829.3 434 86.4
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.4e-238 829.3 450 82.7
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 4.1e-238 827.8 438 84.7
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 3.9e-236 821.2 445 83.6
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 1.9e-235 818.9 455 81.1
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 2.5e-235 818.5 431 85.2
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 5.6e-235 817.4 454 80.2
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 6.2e-234 813.9 439 83.1
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.4e-233 812.8 431 84.0
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 2.3e-233 812.0 429 84.8
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 8.9e-233 810.1 436 83.7
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.5e-232 809.3 432 83.6
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.0e-232 808.9 442 81.7
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 5.8e-232 807.4 475 79.4
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 7.6e-232 807.0 455 80.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.3e-231 806.2 442 81.2
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.2e-231 805.4 479 77.0
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 3.7e-231 804.7 433 83.4
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 4.9e-231 804.3 452 80.5
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.4e-230 802.7 437 83.1
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.4e-230 802.7 437 83.1
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.4e-230 802.7 431 83.5
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 2.4e-230 802.0 431 83.3
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 9.2e-230 800.0 433 82.7
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 9.2e-230 800.0 433 82.7
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 9.2e-230 800.0 431 82.6
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 9.2e-230 800.0 428 84.3
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.7e-229 798.5 432 82.9
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 3.5e-229 798.1 441 81.6
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 6.0e-229 797.3 431 83.1
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 6.0e-229 797.3 452 80.1
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.0e-228 796.6 454 78.6
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.3e-228 796.2 452 79.9
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 5.1e-228 794.3 443 81.5
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.1e-227 793.1 432 82.2
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.9e-227 792.3 441 81.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 3.6e-226 788.1 484 75.4
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 7.6e-224 780.4 447 78.3
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.9e-223 778.5 440 78.6
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.3e-215 753.1 433 78.3
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.7e-215 752.7 442 76.7
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 2.1e-213 745.7 435 77.7
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.0e-212 743.4 380 87.4
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.6e-210 736.1 380 86.6
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 2.4e-209 732.3 448 74.3
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 3.7e-202 708.4 397 79.6
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 4.0e-201 704.9 434 73.0
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 3.5e-197 691.8 448 72.5
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.0e-196 690.3 434 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.5e-195 686.4 419 72.8
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.0e-191 673.7 421 76.0
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.9e-190 669.5 433 72.1
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 3.7e-178 628.6 435 65.7
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.3e-175 620.2 305 91.1
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 3.9e-172 608.6 334 81.7
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.6e-168 596.7 309 86.7
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 6.7e-164 581.3 438 62.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 9.1e-161 570.9 376 71.8
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.3e-159 567.0 455 59.8
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 3.6e-157 558.9 294 85.4
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 3.0e-135 486.1 272 79.8
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 8.4e-90 335.1 196 82.7
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 6.9e-76 288.9 159 80.5
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.6e-75 287.0 180 71.7
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 6.1e-72 275.8 235 59.1
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.8e-69 266.9 132 87.1
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.4e-68 264.6 362 44.2
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 9.1e-68 261.9 140 85.7
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 2.6e-67 260.4 133 87.2
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.7e-64 249.6 120 91.7
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.8e-63 247.7 135 81.5
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 5.1e-63 246.1 216 60.2
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.0e-55 221.9 124 83.1
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.7e-48 197.2 119 76.5
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 2.8e-45 187.2 249 47.4
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 5.5e-33 146.4 98 69.4
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 9.5e-25 119.0 181 40.3
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 9.5e-25 119.0 105 59.0
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.6e-24 118.2 99 59.6
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.6e-24 117.1 82 65.9
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 4.7e-24 116.7 62 82.3
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 2.9e-21 107.5 61 77.0
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 5.8e-14 83.2 68 57.4
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.7e-10 71.6 54 63.0
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 1.2e-08 65.5 43 65.1


User provided reference genes

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