Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.3e-237 824.7 429 100.0
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.4e-208 727.6 424 92.0
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.0e-190 670.2 430 82.3
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 8.7e-190 667.2 430 83.3
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.3e-188 663.3 432 83.8
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.7e-188 661.8 429 81.4
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 3.8e-177 625.2 430 77.0
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 5.5e-176 621.3 439 77.2
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 5.5e-176 621.3 433 76.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.1e-173 613.6 430 74.2
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.8e-172 608.2 431 73.5
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 4.5e-170 601.7 435 74.5
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.3e-169 600.1 431 72.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.7e-169 599.7 430 72.1
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.4e-163 580.1 432 72.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 3.1e-163 578.9 391 74.2
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 4.1e-163 578.6 393 75.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 5.3e-163 578.2 396 73.7
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 7.0e-163 577.8 396 73.2
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.0e-161 573.9 434 71.7
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.2e-161 572.8 450 69.8
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.5e-160 570.1 434 72.4
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.9e-160 569.7 434 71.9
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.7e-159 565.8 430 70.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.7e-159 565.1 395 75.7
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 8.0e-159 564.3 393 75.1
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 4.0e-158 562.0 429 70.4
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 5.2e-158 561.6 435 69.7
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.2e-157 560.5 435 71.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.5e-157 560.1 434 71.2
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-157 559.7 433 69.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.0e-157 559.7 399 74.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 4.8e-156 555.1 389 73.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.8e-156 555.1 389 73.0
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 4.8e-156 555.1 437 71.4
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.1e-155 553.9 390 72.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.4e-155 552.7 434 69.8
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-155 552.7 389 72.8
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.1e-155 552.0 389 72.2
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 4.1e-155 552.0 390 72.3
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-154 550.1 389 72.2
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 5.9e-154 548.1 359 77.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.9e-153 545.8 435 69.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 5.0e-153 545.0 438 67.4
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.5e-153 544.3 435 69.7
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 7.2e-152 541.2 432 68.1
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.2e-152 541.2 435 69.2
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.7e-151 539.3 396 70.5
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.0e-150 537.3 444 66.9
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.8e-150 536.6 393 68.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 8.8e-150 534.3 435 69.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.2e-149 533.9 394 70.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.0e-149 533.1 430 69.5
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.0e-149 533.1 436 67.0
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 9.8e-149 530.8 434 69.1
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.3e-148 530.4 396 71.0
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.3e-148 530.4 399 70.2
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.6e-146 523.5 442 67.2
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.0e-146 523.1 431 67.3
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 7.7e-146 521.2 434 67.1
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.7e-145 520.0 400 67.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.9e-145 519.2 435 68.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 5.0e-145 518.5 439 67.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 6.6e-145 518.1 430 67.4
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 6.6e-145 518.1 438 66.9
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.1e-144 517.3 393 69.0
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.5e-144 516.2 430 67.4
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.2e-144 515.4 434 67.5
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.6e-143 513.5 398 68.3
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 8.0e-143 511.1 430 67.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.3e-142 509.6 435 67.4
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.0e-142 509.2 394 69.0
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 5.2e-142 508.4 435 67.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 3.4e-141 505.8 430 65.1
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 9.8e-141 504.2 388 67.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.8e-140 502.7 394 67.8
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.7e-140 502.3 434 68.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.4e-139 500.4 415 64.3
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.4e-139 500.4 396 65.7
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.4e-139 499.6 392 66.3
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.4e-139 499.6 395 67.1
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.1e-139 499.2 432 66.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.7e-138 496.1 388 65.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.0e-137 494.2 439 65.4
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.9e-137 492.7 395 64.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.6e-137 491.1 430 64.2
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 8.6e-137 491.1 398 66.6
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.5e-136 490.3 418 63.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.9e-136 490.0 440 65.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.6e-135 486.9 429 64.3
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.8e-135 486.1 431 65.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 6.1e-135 485.0 431 65.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.1e-134 482.6 433 63.0
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 6.8e-134 481.5 398 64.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 8.9e-134 481.1 398 64.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 8.9e-134 481.1 398 64.8
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 8.9e-134 481.1 382 67.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-133 480.7 404 65.6
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.8e-133 477.6 429 63.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.4e-131 473.0 430 62.3
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.0e-131 471.5 383 64.2
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.2e-130 470.7 431 62.6
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.7e-130 469.5 429 60.6
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.5e-128 463.0 429 62.7
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.4e-124 448.4 433 61.4
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 8.3e-124 448.0 434 62.0
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-123 447.2 393 59.8
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.6e-122 443.7 393 59.3
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 2.1e-122 443.4 434 61.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.5e-122 442.6 429 60.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.8e-122 441.4 433 60.3
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.6e-121 438.3 392 58.9
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.1e-120 437.6 429 59.9
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.6e-119 433.7 318 68.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 9.9e-117 424.5 310 69.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.7e-116 422.5 383 60.3
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.4e-115 419.9 468 54.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.0e-113 414.5 383 59.0
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.4e-110 403.3 384 59.6
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.5e-109 400.6 385 57.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.1e-107 394.4 395 54.2
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.0e-94 349.4 304 60.2
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.6e-90 337.4 421 48.5
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.3e-88 329.3 191 97.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 6.0e-82 308.9 240 68.8
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.2e-74 284.6 225 63.1
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 6.7e-73 278.9 248 58.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.4e-70 270.4 394 40.9
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.4e-70 270.4 292 49.3
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.3e-70 269.2 157 84.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.4e-67 261.2 227 63.0
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.8e-63 246.1 204 63.2
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.7e-55 221.1 192 70.8
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.2e-53 214.9 194 61.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 3.8e-52 209.9 190 70.0
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.6e-48 197.2 356 36.2
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 6.1e-42 176.0 310 35.8
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 9.8e-24 115.5 111 60.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.7e-18 96.7 79 59.5
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.7e-12 78.2 93 55.9
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.3e-12 77.8 69 58.0
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-07 61.6 36 63.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 4.9e-07 60.1 164 29.3
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 7.1e-06 56.2 137 34.3


User provided reference genes

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