Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 9.0e-72 273.5 137 100.0
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 5.9e-47 191.0 98 96.9
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 5.5e-45 184.5 120 76.7
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.7e-44 182.2 98 90.8
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 4.6e-44 181.4 98 90.8
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 1.4e-43 179.9 98 90.8
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 3.0e-43 178.7 98 87.8
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 3.0e-43 178.7 128 75.0
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 3.9e-43 178.3 98 87.8
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 3.9e-43 178.3 98 88.8
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 3.9e-43 178.3 98 88.8
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 3.9e-43 178.3 97 89.7
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 5.1e-43 177.9 98 89.8
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 8.8e-43 177.2 98 86.7
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 2.0e-42 176.0 98 85.7
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 2.5e-42 175.6 98 85.7
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.5e-42 175.6 98 86.7
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 2.5e-42 175.6 98 86.7
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.5e-42 175.6 98 86.7
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.3e-42 175.3 98 84.7
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 4.3e-42 174.9 98 84.7
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 4.3e-42 174.9 98 84.7
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.3e-42 174.9 98 86.7
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 4.3e-42 174.9 98 85.7
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 5.7e-42 174.5 98 84.7
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 5.7e-42 174.5 98 85.7
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 5.7e-42 174.5 98 84.7
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 5.7e-42 174.5 98 85.7
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 9.7e-42 173.7 98 84.7
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 9.7e-42 173.7 98 83.7
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 9.7e-42 173.7 124 73.4
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 9.7e-42 173.7 98 85.7
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.3e-41 173.3 98 84.7
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 1.7e-41 172.9 98 83.7
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 1.7e-41 172.9 98 84.7
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.8e-41 172.2 98 82.7
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.8e-41 172.2 98 82.7
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 2.8e-41 172.2 98 86.7
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 3.7e-41 171.8 98 84.7
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 3.7e-41 171.8 98 81.6
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 3.7e-41 171.8 98 83.7
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 3.7e-41 171.8 98 83.7
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 3.7e-41 171.8 98 81.6
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 4.8e-41 171.4 98 82.7
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 4.8e-41 171.4 98 82.7
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.8e-41 171.4 98 82.7
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 4.8e-41 171.4 98 81.6
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 6.3e-41 171.0 98 81.6
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 1.1e-40 170.2 98 82.7
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 1.4e-40 169.9 98 84.7
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 1.8e-40 169.5 98 80.6
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.8e-40 169.5 98 80.6
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 1.8e-40 169.5 98 83.7
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 2.4e-40 169.1 98 82.7
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 3.1e-40 168.7 98 82.7
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 3.1e-40 168.7 98 84.7
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 3.1e-40 168.7 98 80.6
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.1e-40 168.7 98 82.7
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.1e-40 168.3 98 79.6
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.1e-40 168.3 98 81.6
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 79.6
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 80.6
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 5.3e-40 167.9 98 81.6
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 82.7
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 82.7
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 82.7
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 82.7
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 82.7
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 79.6
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 83.7
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 80.6
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 83.7
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 82.7
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 6.9e-40 167.5 98 81.6
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.2e-39 166.8 98 83.7
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.2e-39 166.8 98 82.7
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.5e-39 166.4 98 80.6
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.0e-39 166.0 98 77.6
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 2.0e-39 166.0 98 78.6
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 2.0e-39 166.0 98 77.6
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 2.0e-39 166.0 98 79.6
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 2.6e-39 165.6 98 81.6
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 3.4e-39 165.2 98 79.6
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 5.9e-39 164.5 98 79.6
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 5.9e-39 164.5 98 79.6
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 7.7e-39 164.1 98 80.6
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 7.7e-39 164.1 98 79.6
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 1.0e-38 163.7 98 80.6
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 1.0e-38 163.7 98 76.5
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 1.0e-38 163.7 98 77.6
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 1.7e-38 162.9 119 68.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 2.2e-38 162.5 98 81.6
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 2.2e-38 162.5 98 78.6
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 2.9e-38 162.2 98 77.6
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 3.8e-38 161.8 98 80.6
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 3.8e-38 161.8 98 77.6
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 5.0e-38 161.4 127 66.1
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 5.0e-38 161.4 98 76.5
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 5.0e-38 161.4 98 78.6
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 5.0e-38 161.4 98 78.6
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 6.5e-38 161.0 98 76.5
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 6.5e-38 161.0 98 78.6
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 6.5e-38 161.0 98 75.5
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 6.5e-38 161.0 98 78.6
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 6.5e-38 161.0 98 78.6
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 8.5e-38 160.6 98 79.6
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 8.5e-38 160.6 98 74.5
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 1.1e-37 160.2 98 78.6
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 1.9e-37 159.5 98 77.6
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 2.5e-37 159.1 98 76.5
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 2.5e-37 159.1 97 76.3
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 3.2e-37 158.7 98 75.5
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 3.2e-37 158.7 98 78.6
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.2e-37 158.3 98 76.5
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 5.5e-37 157.9 98 76.5
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 5.5e-37 157.9 93 79.6
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 7.2e-37 157.5 98 77.6
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 7.2e-37 157.5 98 78.6
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 1.6e-36 156.4 98 76.5
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 2.1e-36 156.0 98 79.6
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 2.7e-36 155.6 98 75.5
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 1.4e-35 153.3 98 71.4
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 3.9e-35 151.8 98 71.4
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 2.0e-34 149.4 99 72.7
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 7.4e-34 147.5 98 70.4
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.2e-33 146.0 87 80.5
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.8e-32 142.9 98 70.4
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.6e-31 139.0 98 69.4
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 7.7e-31 137.5 78 83.3
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.0e-30 137.1 101 71.3
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.3e-30 136.7 104 65.4
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 2.9e-30 135.6 82 79.3
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 5.0e-30 134.8 82 78.0
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 3.0e-27 125.6 106 62.3
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 8.8e-27 124.0 107 60.7
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 8.8e-27 124.0 99 58.6
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.3e-25 120.2 107 58.9
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 3.7e-25 118.6 107 57.9
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.4e-24 115.9 61 90.2
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.9e-22 109.0 62 80.6
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 3.8e-22 108.6 66 77.3
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 3.2e-21 105.5 114 54.4
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 8.0e-20 100.9 106 50.9
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.4e-16 90.1 106 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.8e-16 89.7 97 50.5
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.9e-13 79.7 71 63.4
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 3.6e-12 75.5 101 42.6
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 6.1e-12 74.7 40 87.5
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 6.1e-12 74.7 35 97.1
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.0e-11 73.9 81 54.3
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.0e-11 72.4 82 52.4
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 5.2e-11 71.6 45 64.4
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 2.8e-09 65.9 97 43.3
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.8e-08 63.2 34 76.5
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 7.0e-08 61.2 35 74.3
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 7.0e-08 61.2 58 51.7
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 3.5e-07 58.9 42 66.7


User provided reference genes

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