Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 1.4e-79 299.7 161 100.0
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 4.6e-59 231.5 149 81.9
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 7.8e-59 230.7 147 81.6
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 2.8e-56 222.2 144 77.1
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.0e-54 216.1 149 75.8
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 7.6e-54 214.2 141 71.6
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 9.9e-54 213.8 141 73.0
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 3.8e-53 211.8 143 71.3
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 3.8e-53 211.8 124 81.5
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 8.4e-53 210.7 150 69.3
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.4e-52 209.9 142 72.5
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 1.9e-52 209.5 144 75.0
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 2.4e-52 209.1 149 73.2
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 2.4e-52 209.1 145 72.4
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 7.1e-52 207.6 142 71.1
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 9.3e-52 207.2 129 77.5
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 2.1e-51 206.1 146 69.9
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 2.1e-51 206.1 141 72.3
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 2.7e-51 205.7 130 76.2
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 3.5e-51 205.3 142 71.1
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 4.6e-51 204.9 146 69.2
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 7.9e-51 204.1 124 76.6
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 1.0e-50 203.8 142 71.8
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 1.8e-50 203.0 151 67.5
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 1.8e-50 203.0 124 76.6
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 2.3e-50 202.6 152 71.7
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 3.9e-50 201.8 126 77.0
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 5.1e-50 201.4 148 66.9
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 5.6e-49 198.0 147 68.0
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 7.4e-49 197.6 146 69.9
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 2.8e-48 195.7 122 74.6
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 4.8e-48 194.9 142 68.3
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 4.8e-48 194.9 128 74.2
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 6.2e-48 194.5 147 67.3
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 8.1e-48 194.1 135 71.1
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 8.1e-48 194.1 143 67.8
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 1.1e-47 193.7 154 64.3
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 1.8e-47 193.0 142 65.5
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 3.1e-47 192.2 151 66.2
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 3.1e-47 192.2 134 66.4
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 3.1e-47 192.2 143 67.1
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 5.3e-47 191.4 142 66.2
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 5.3e-47 191.4 143 68.5
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 9.0e-47 190.7 124 75.0
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 9.0e-47 190.7 159 65.4
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 1.2e-46 190.3 147 64.6
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 2.6e-46 189.1 129 71.3
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 3.4e-46 188.7 127 70.9
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 4.5e-46 188.3 153 64.7
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 5.8e-46 188.0 146 66.4
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 9.9e-46 187.2 145 66.2
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 2.2e-45 186.0 143 67.8
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 2.2e-45 186.0 144 68.1
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 4.9e-45 184.9 147 66.0
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 1.1e-44 183.7 146 61.0
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 1.4e-44 183.3 146 61.6
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 1.9e-44 183.0 124 73.4
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.4e-44 182.6 127 70.9
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 3.2e-44 182.2 147 65.3
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 4.2e-44 181.8 146 61.0
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 5.5e-44 181.4 147 61.2
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 5.5e-44 181.4 149 63.1
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 7.1e-44 181.0 144 61.1
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 9.3e-44 180.6 146 59.6
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 9.3e-44 180.6 145 60.0
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 9.3e-44 180.6 123 69.9
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 9.3e-44 180.6 123 69.9
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.1e-43 179.5 145 64.1
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 6.0e-43 177.9 147 60.5
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 7.9e-43 177.6 147 60.5
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 7.9e-43 177.6 148 60.1
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 1.0e-42 177.2 160 58.8
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 1.0e-42 177.2 146 61.6
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 1.3e-42 176.8 145 59.3
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 2.3e-42 176.0 136 65.4
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 2.3e-42 176.0 144 61.1
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 2.3e-42 176.0 146 58.9
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 2.3e-42 176.0 145 61.4
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 8.7e-42 174.1 144 59.7
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 8.7e-42 174.1 144 59.7
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 1.1e-41 173.7 144 59.7
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 1.9e-41 172.9 144 61.1
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 1.3e-40 170.2 143 55.9
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 2.1e-40 169.5 145 62.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.3e-39 164.9 141 56.7
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 1.2e-38 163.7 137 57.7
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.0e-37 160.6 146 61.0
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.0e-37 160.6 146 61.0
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 1.3e-37 160.2 127 62.2
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 1.3e-37 160.2 127 60.6
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 6.5e-37 157.9 114 70.2
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 6.5e-37 157.9 129 62.0
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 1.4e-36 156.8 143 58.7
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 2.5e-36 156.0 107 69.2
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 3.2e-36 155.6 150 57.3
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 5.5e-36 154.8 105 73.3
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 2.1e-35 152.9 106 70.8
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 5.9e-30 134.8 97 72.2
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.0e-29 134.0 145 48.3
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 5.1e-26 121.7 109 54.1
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 6.7e-26 121.3 84 75.0
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.3e-18 96.3 77 68.8
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 2.4e-15 86.3 58 79.3
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 2.4e-15 86.3 58 77.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.5e-14 83.6 67 62.7
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.4e-14 82.4 109 40.4
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 6.5e-13 78.2 108 42.6
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.6e-11 72.4 113 36.3
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 6.7e-10 68.2 105 39.0
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.8e-07 60.1 107 31.8
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 3.1e-07 59.3 111 34.2
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 5.3e-07 58.5 91 40.7
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 9.1e-07 57.8 89 41.6
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 1.2e-06 57.4 109 35.8
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.2e-06 57.4 109 35.8
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 2.0e-06 56.6 89 38.2
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.0e-06 56.6 89 38.2
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 2.0e-06 56.6 89 37.1
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 2.0e-06 56.6 90 40.0
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.6e-06 56.2 90 40.0
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 3.5e-06 55.8 106 34.9
ATR0414G002 Amborella trichopoda HOM05D007363 ORTHO05D009018 4.5e-06 55.5 141 31.9
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 4.5e-06 55.5 89 36.0
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 5.9e-06 55.1 124 34.7
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 5.9e-06 55.1 91 37.4
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.9e-06 55.1 89 37.1
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 7.7e-06 54.7 89 39.3
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 7.7e-06 54.7 91 38.5
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.7e-06 54.7 90 38.9


User provided reference genes

Program Settings