Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1976.1 1000 100.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1634.0 1001 82.4
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1574.7 1049 76.9
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1550.0 1000 78.6
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1530.4 1001 76.4
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1526.5 1021 76.7
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1492.2 1001 74.0
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1474.1 987 74.6
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1467.2 1004 73.4
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1460.3 1001 73.1
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1450.6 1001 72.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1443.3 1066 69.6
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1437.6 1009 72.4
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1436.8 1001 72.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1436.0 999 72.3
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1431.4 996 72.3
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1429.1 988 72.0
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1427.9 1001 71.3
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1424.5 1001 71.2
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1422.1 1000 71.5
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1419.8 1000 71.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1411.4 1002 70.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1408.3 1001 70.6
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1406.7 1008 69.9
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1406.3 1001 70.2
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1406.3 1002 69.8
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1404.4 998 70.0
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1402.1 998 70.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1396.3 1003 70.6
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1395.6 1001 69.3
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1383.2 999 69.8
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1382.5 1001 69.3
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1380.2 1002 70.2
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1378.2 1000 69.3
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1366.3 1075 65.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1364.0 1001 68.8
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1357.8 1000 68.9
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1347.4 1000 68.0
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1345.9 1001 67.6
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1342.4 1002 67.7
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1328.9 1001 66.0
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1325.5 1002 66.7
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1321.6 1007 66.8
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1318.5 994 66.6
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1316.2 1007 66.7
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1315.1 1000 67.4
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1313.1 1003 65.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1311.2 1006 67.0
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1307.7 1002 65.2
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1306.6 1003 64.9
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1303.9 1002 65.1
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1302.3 1003 64.9
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1301.6 1000 66.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1301.2 1001 65.2
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1300.0 1002 65.1
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1298.5 1003 65.4
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1298.1 1002 64.9
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1280.8 1003 63.7
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1280.4 1003 64.2
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1278.8 1003 64.8
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 1000 64.4
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1277.3 1000 64.4
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1275.0 1003 63.6
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1272.3 1003 64.1
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1267.3 1003 63.5
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1263.1 1003 64.3
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1262.3 1006 63.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1260.0 1002 63.4
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1259.2 1001 63.6
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1256.9 1003 63.3
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1256.1 1002 63.1
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1248.8 1002 62.7
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1248.4 1002 62.7
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1248.4 1002 62.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1248.0 1002 62.8
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1244.2 1002 62.7
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1227.6 1000 62.1
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1220.7 1011 61.2
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1192.2 1000 61.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1167.9 982 61.9
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1158.7 776 74.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1144.0 796 71.5
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1107.0 781 71.4
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1099.7 1006 57.5
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 6.8e-312 1074.7 1007 56.1
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 8.3e-308 1060.4 1008 55.4
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.3e-302 1042.3 610 84.9
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 3.5e-290 1001.9 594 83.8
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 6.4e-284 981.1 693 69.3
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.8e-268 928.7 972 52.4
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 9.3e-259 897.5 742 60.5
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-255 887.1 1015 48.1
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-251 872.1 1017 47.5
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 7.1e-251 871.3 764 57.2
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.4e-237 825.9 975 46.8
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 4.2e-235 818.9 863 50.2
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.5e-221 773.9 1004 45.8
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.0e-217 761.1 544 71.9
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.3e-216 756.1 504 74.2
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 7.2e-195 685.3 538 63.2
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 9.4e-195 684.9 453 75.5
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.3e-188 663.7 528 66.7
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.2e-185 652.5 572 62.2
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 6.8e-185 652.1 432 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 2.0e-184 650.6 1035 39.1
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 5.7e-184 649.0 500 65.8
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 9.5e-179 631.7 1027 38.3
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.3e-172 611.3 500 63.0
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.1e-171 608.2 421 71.3
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-164 584.7 451 64.7
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.7e-159 567.8 1005 34.8
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.8e-129 468.0 624 43.6
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 8.2e-122 442.6 1044 30.3
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.2e-120 438.7 525 47.4
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.9e-111 407.5 266 80.1
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.6e-109 400.6 410 50.7
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 7.9e-109 399.4 296 64.5
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.8e-108 398.3 237 82.3
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.9e-100 370.5 237 78.9
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 3.0e-92 344.4 321 58.3
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.2e-92 343.6 308 60.1
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.8e-89 335.1 305 59.0
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 7.5e-83 313.2 454 43.2
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.9e-58 231.5 432 37.3
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 4.1e-57 227.6 362 39.8
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-56 225.7 362 39.5
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 2.1e-48 198.7 110 90.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 1.3e-47 196.1 166 63.3
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 1.3e-47 196.1 166 63.3
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 2.6e-43 181.8 803 26.7
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.6e-43 181.8 708 25.7
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 3.2e-41 174.9 397 35.3
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 4.1e-41 174.5 243 41.6
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-40 172.6 393 34.6
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 4.3e-38 164.5 753 25.5
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-36 158.7 433 30.7
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 8.9e-36 156.8 312 36.5
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 4.9e-34 151.0 162 53.1
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 1.4e-33 149.4 154 50.6
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 3.0e-31 141.7 119 65.5
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 1.4e-28 132.9 122 62.3
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 2.2e-26 125.6 69 87.0
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-25 123.2 335 29.3
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 3.9e-23 114.8 76 72.4
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 6.2e-21 107.5 444 25.5
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.0e-19 102.4 188 35.1
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 3.4e-19 101.7 87 52.9
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 7.6e-19 100.5 195 36.4
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 5.4e-17 94.4 71 70.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 7.9e-16 90.5 65 67.7
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 8.1e-13 80.5 46 82.6
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.4e-12 79.7 49 71.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.2e-11 76.6 62 61.3
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 4.6e-08 64.7 82 41.5
Peaxi162Scf00207g00840 Petunia axillaris HOM05D002927 ORTHO05D003841 1.1e-06 60.1 262 25.2
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 1.9e-06 59.3 60 45.0
THA.LOC104813572 Tarenaya hassleriana HOM05D002927 ORTHO05D003841 4.3e-06 58.2 260 24.6
Potri.003G056700 Populus trichocarpa HOM05D002927 ORTHO05D003841 5.7e-06 57.8 259 23.6


User provided reference genes

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