Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 8.0e-214 746.9 398 100.0
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.0e-208 729.9 391 99.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 4.8e-166 588.2 360 78.1
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.4e-165 585.9 357 78.7
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 4.0e-165 585.1 358 78.8
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.3e-163 580.1 358 77.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.1e-162 577.0 359 77.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 4.2e-162 575.1 358 79.1
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.5e-162 574.7 294 92.5
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.5e-161 572.0 362 76.8
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 6.1e-161 571.2 360 75.6
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.3e-160 570.1 362 76.5
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.1e-160 568.2 362 76.5
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.1e-160 568.2 358 76.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.5e-159 566.6 362 75.4
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.3e-159 565.5 347 78.1
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 7.4e-159 564.3 361 74.2
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.1e-157 560.5 359 75.2
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.1e-157 560.5 348 77.0
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 9.0e-157 557.4 363 74.1
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 9.0e-157 557.4 361 73.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.5e-156 556.6 363 73.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.0e-156 556.2 363 74.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.5e-156 555.1 360 74.4
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.7e-155 553.1 360 73.9
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.8e-155 552.0 360 73.9
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 5.0e-155 551.6 350 74.6
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 6.5e-155 551.2 358 73.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 8.5e-155 550.8 360 73.9
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.9e-154 549.7 358 74.0
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.9e-154 549.7 359 73.8
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 2.5e-154 549.3 358 74.3
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 9.4e-154 547.4 361 72.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 9.4e-154 547.4 358 73.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.1e-153 546.2 361 73.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.4e-152 543.5 358 72.9
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.3e-152 542.7 360 72.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.9e-152 542.0 358 73.2
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.9e-152 542.0 358 73.2
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.9e-152 542.0 337 76.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.1e-151 540.4 362 73.5
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.5e-151 540.0 360 72.8
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.3e-151 538.5 357 72.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 5.7e-151 538.1 363 71.1
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-150 537.0 349 74.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.7e-150 536.6 362 71.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.2e-150 536.2 358 71.5
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 4.8e-150 535.0 362 70.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 8.2e-150 534.3 358 72.6
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 8.2e-150 534.3 391 69.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 2.4e-149 532.7 397 65.7
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 3.1e-149 532.3 362 69.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 6.9e-149 531.2 348 74.1
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.6e-148 529.3 363 69.7
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 7.7e-148 527.7 346 74.6
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.0e-147 527.3 360 70.6
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.3e-147 526.9 364 70.6
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-147 526.9 358 70.9
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-147 526.6 391 66.2
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.2e-147 526.2 358 70.9
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.0e-147 525.0 358 71.2
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.5e-147 524.2 357 71.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-146 523.9 366 69.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.1e-146 523.9 366 69.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.1e-146 523.9 348 72.4
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-146 523.5 392 66.1
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-146 523.5 394 65.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.2e-146 522.3 347 73.2
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 7.2e-146 521.2 394 65.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 7.2e-146 521.2 361 71.2
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.2e-145 520.4 392 65.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.2e-145 520.4 372 69.1
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 2.7e-145 519.2 326 74.8
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.7e-145 518.5 388 66.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.7e-145 518.5 388 66.0
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.4e-144 516.9 356 71.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.8e-144 516.5 388 65.5
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.3e-144 516.2 370 68.9
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 3.0e-144 515.8 388 65.7
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 6.7e-144 514.6 391 65.0
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 8.8e-144 514.2 399 67.2
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.1e-143 513.8 363 69.4
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-143 513.8 332 73.5
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-143 513.8 362 69.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.3e-143 512.3 361 69.0
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.7e-143 511.5 359 69.4
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 5.7e-143 511.5 359 67.7
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 7.4e-143 511.1 360 68.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 2.2e-142 509.6 360 69.2
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.7e-142 508.8 347 71.8
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.8e-142 508.4 360 68.1
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 6.3e-142 508.1 354 70.6
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.1e-141 507.3 386 66.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.8e-141 506.5 360 68.3
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.8e-141 506.5 363 67.2
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.1e-141 505.4 362 68.2
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 7.0e-141 504.6 349 71.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 7.0e-141 504.6 393 63.6
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 9.1e-141 504.2 359 66.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 9.1e-141 504.2 386 66.6
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.6e-140 502.7 359 68.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.7e-139 500.0 348 69.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 6.5e-139 498.0 366 67.5
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 3.2e-138 495.7 361 67.9
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 4.2e-138 495.4 294 78.2
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.7e-137 492.7 337 72.4
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.7e-137 491.9 358 65.4
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.0e-136 490.7 358 66.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 6.7e-136 488.0 335 71.3
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 8.8e-136 487.6 358 68.2
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 4.4e-135 485.3 389 64.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 5.7e-135 485.0 366 67.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 8.5e-131 471.1 356 65.4
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.6e-129 465.7 341 65.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 3.5e-124 449.1 369 61.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.0e-123 447.6 368 60.9
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 8.0e-121 438.0 356 61.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.0e-120 436.0 324 66.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.0e-120 436.0 294 68.7
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.4e-119 432.2 232 85.3
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.1e-117 427.6 334 62.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.8e-117 426.8 335 62.4
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.7e-116 422.9 314 65.6
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 5.0e-115 418.7 338 63.0
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 4.7e-113 412.1 363 57.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.0e-113 411.4 281 72.2
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.4e-111 405.6 292 68.2
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.3e-107 393.3 308 60.1
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 4.7e-105 385.6 360 55.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.0e-103 380.2 198 88.4
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.3e-102 377.5 206 85.4
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.1e-101 374.4 339 55.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.1e-98 364.4 316 59.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.1e-93 347.8 200 78.0
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 3.9e-91 339.3 225 71.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.6e-89 332.8 183 83.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.4e-85 320.1 231 66.7
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.4e-80 304.3 233 66.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.0e-76 288.9 229 63.3
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 7.8e-76 288.5 393 40.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.3e-74 283.1 264 53.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 5.8e-71 272.3 306 43.5
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 3.2e-69 266.5 340 41.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.5e-68 263.1 221 60.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.0e-64 249.6 255 51.4
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.1e-60 237.3 295 42.7
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.3e-51 208.0 194 56.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 7.4e-50 202.2 329 37.1
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.7e-49 199.9 125 76.8
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-37 161.0 148 58.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 6.7e-27 125.9 101 61.4
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.2e-25 120.9 65 83.1
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.5e-23 113.2 113 52.2
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 5.5e-21 106.3 57 80.7
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 8.5e-06 55.8 43 60.5


User provided reference genes

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