Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.3e-194 680.2 357 100.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-125 453.4 371 69.8
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.1e-124 448.7 371 69.3
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 9.7e-118 427.6 376 66.5
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.3e-117 427.2 365 67.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.9e-114 416.0 374 63.1
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.2e-112 410.6 370 65.7
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 5.2e-111 405.2 377 64.5
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 4.0e-103 379.0 373 59.5
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.5e-94 350.5 375 56.5
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.6e-94 349.7 375 57.1
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.7e-94 348.6 390 52.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.2e-90 336.7 375 56.8
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.2e-88 330.9 375 54.4
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.3e-87 326.6 376 55.9
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.0e-87 325.9 371 54.4
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.6e-83 313.9 366 53.6
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 3.3e-81 306.2 387 51.2
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 5.6e-81 305.4 394 52.0
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 4.0e-79 299.3 389 51.9
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.4e-76 290.8 382 51.6
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 5.4e-76 288.9 392 50.8
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 5.4e-76 288.9 385 49.9
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 9.2e-76 288.1 388 50.5
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.0e-75 287.0 396 49.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.0e-74 284.6 357 51.0
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.7e-74 283.9 374 48.9
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.3e-74 283.5 382 50.8
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 9.5e-73 278.1 408 47.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.1e-72 276.9 360 52.5
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 4.0e-71 272.7 363 50.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 4.0e-71 272.7 398 47.0
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 6.8e-71 271.9 375 48.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.0e-70 270.4 375 48.5
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.3e-69 267.7 384 50.3
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.7e-69 267.3 393 48.3
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.7e-69 267.3 390 48.2
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.9e-69 265.8 384 49.7
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.9e-69 265.8 377 49.6
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.9e-68 263.8 391 45.5
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 3.2e-68 263.1 380 46.8
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.6e-67 260.8 384 47.9
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.7e-67 260.0 376 46.5
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 3.5e-67 259.6 431 41.5
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.6e-67 259.2 376 47.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.8e-67 258.5 390 46.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 8.6e-66 255.0 393 45.5
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.1e-65 254.6 397 47.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.5e-65 254.2 394 45.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 3.3e-65 253.1 375 46.7
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.3e-65 253.1 390 46.4
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 3.3e-65 253.1 438 44.1
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.3e-65 253.1 375 46.9
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 5.6e-65 252.3 423 43.0
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.2e-64 251.1 383 48.0
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.8e-64 250.0 382 47.4
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.2e-64 248.8 386 48.4
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 3.1e-63 246.5 385 45.2
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 8.9e-63 245.0 390 45.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.5e-62 241.9 425 41.6
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.3e-61 241.1 496 39.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.3e-61 241.1 378 45.0
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.7e-61 240.7 384 43.8
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.9e-61 239.2 360 47.5
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.4e-61 238.8 357 47.1
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 6.4e-61 238.8 358 46.6
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.4e-60 237.7 360 47.2
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.4e-60 236.9 425 41.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.1e-60 235.3 426 40.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-59 234.6 425 41.6
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.6e-59 234.2 372 44.6
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.1e-59 233.8 394 44.4
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.7e-59 233.4 375 43.7
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 4.6e-59 232.6 426 40.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 6.0e-59 232.3 380 44.5
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 7.8e-59 231.9 382 44.0
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.0e-58 231.5 391 42.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.3e-58 231.1 380 46.6
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.7e-58 230.7 407 41.0
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.7e-58 230.7 353 47.0
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.7e-58 230.7 417 41.2
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 5.1e-58 229.2 382 45.3
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.8e-55 220.7 385 45.7
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.0e-55 219.5 390 45.9
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.5e-54 217.6 385 45.2
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.0e-54 217.2 366 45.9
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 4.4e-54 216.1 467 37.9
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.9e-54 214.9 199 58.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 4.9e-53 212.6 394 42.9
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.9e-52 210.7 466 37.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 9.2e-52 208.4 391 40.7
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.6e-51 206.1 373 41.8
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.7e-50 204.1 374 41.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 8.6e-50 201.8 375 42.1
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.9e-49 200.7 390 39.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.9e-49 200.7 502 34.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 5.6e-49 199.1 381 43.0
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.2e-48 198.0 388 39.2
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 4.7e-48 196.1 464 36.6
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 6.2e-48 195.7 372 42.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 8.1e-48 195.3 468 35.9
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 4.0e-47 193.0 243 51.0
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 5.2e-47 192.6 367 40.3
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 9.9e-46 188.3 378 40.5
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.7e-45 187.6 381 40.4
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.7e-45 187.6 386 37.6
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.2e-45 187.2 369 42.0
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 6.4e-45 185.7 373 40.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 1.1e-44 184.9 388 41.0
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.1e-44 184.9 392 40.8
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.9e-44 184.1 388 41.2
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-43 180.3 384 38.8
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.3e-42 177.2 388 39.7
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.3e-42 177.2 380 41.3
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 3.0e-42 176.8 388 39.4
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.5e-41 173.7 359 38.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 4.3e-41 172.9 384 38.0
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 4.3e-41 172.9 384 38.0
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 4.3e-41 172.9 384 38.0
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.3e-40 171.4 378 39.4
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.4e-39 167.9 366 37.2
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.4e-39 167.9 382 37.7
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.3e-39 166.0 377 38.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 5.3e-39 166.0 382 38.2
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.0e-39 165.2 394 37.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 4.5e-38 162.9 397 34.3
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.9e-37 160.2 386 38.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.4e-36 157.1 257 45.5
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 4.2e-36 156.4 380 35.5
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.4e-36 156.0 394 35.5
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.3e-34 151.4 400 34.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 5.1e-34 149.4 400 34.5
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.3e-32 144.8 363 33.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.1e-28 131.7 356 34.3
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.6e-24 117.9 113 54.0
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.8e-24 117.1 379 32.5
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.8e-24 117.1 379 32.5
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 2.6e-22 110.5 254 37.8
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 2.2e-16 90.9 158 36.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 8.2e-16 89.0 456 27.4
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.1e-15 87.0 359 28.4
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 7.6e-14 82.4 135 45.2
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 8.2e-08 62.4 143 41.3


User provided reference genes

Program Settings