Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.5e-122 442.2 231 100.0
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.2e-121 439.9 231 99.1
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 2.1e-97 359.4 233 80.7
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.0e-96 357.1 217 84.8
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 6.7e-96 354.4 231 80.5
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.5e-95 353.2 231 80.1
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.9e-90 336.3 231 77.1
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.6e-89 332.0 232 74.6
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 8.0e-89 330.9 235 74.9
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 8.0e-89 330.9 230 77.0
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.0e-88 330.5 231 75.3
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.8e-88 329.7 226 77.0
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 5.2e-88 328.2 230 74.3
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.2e-87 327.0 231 74.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.4e-87 325.1 251 68.5
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 5.7e-87 324.7 251 68.1
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 7.5e-87 324.3 251 68.1
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 7.5e-87 324.3 231 71.9
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.8e-86 322.4 251 68.1
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 3.7e-86 322.0 250 68.4
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 8.3e-86 320.9 248 68.5
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.1e-85 320.5 231 72.7
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.8e-85 319.7 235 73.2
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.4e-85 319.3 230 72.6
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 4.1e-85 318.5 215 79.1
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 9.1e-85 317.4 234 73.5
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.6e-84 316.6 235 73.2
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.0e-84 316.2 234 73.1
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 3.5e-84 315.5 234 72.6
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.9e-84 314.7 234 72.2
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 5.9e-84 314.7 222 74.3
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 5.9e-84 314.7 252 67.5
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 7.7e-84 314.3 236 72.9
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.0e-83 313.9 234 72.2
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.0e-83 313.9 234 71.8
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.0e-83 313.9 235 72.8
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 5.0e-83 311.6 233 70.0
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.5e-83 311.2 233 71.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 8.6e-83 310.8 232 72.0
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 8.6e-83 310.8 225 74.2
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.9e-82 309.7 251 66.1
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.5e-82 309.3 232 71.6
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 2.5e-82 309.3 231 71.4
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 3.3e-82 308.9 227 70.5
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.6e-81 306.6 231 71.9
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 6.1e-81 304.7 236 69.5
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 6.1e-81 304.7 236 69.5
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.4e-80 303.5 226 71.7
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 4.0e-80 302.0 229 67.7
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 5.2e-80 301.6 231 70.1
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 2.0e-79 299.7 234 67.5
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 2.0e-79 299.7 235 69.4
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 3.4e-79 298.9 226 70.8
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 4.4e-79 298.5 234 69.2
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 7.5e-79 297.7 227 70.0
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 7.5e-79 297.7 234 68.8
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.7e-78 296.6 238 66.8
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 7.0e-77 291.2 226 69.0
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.2e-76 290.4 232 65.5
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 5.9e-76 288.1 236 68.6
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 5.9e-76 288.1 201 75.6
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.3e-75 286.2 227 67.4
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 3.8e-75 285.4 227 67.8
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 3.8e-75 285.4 232 64.7
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 6.6e-75 284.6 235 67.7
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 3.3e-74 282.3 226 68.1
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 3.3e-74 282.3 235 66.4
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 9.5e-74 280.8 198 75.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 6.1e-73 278.1 224 67.4
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.0e-72 277.3 239 63.2
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.4e-72 276.9 230 65.2
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.8e-72 276.6 241 63.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 5.2e-72 275.0 223 66.4
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 8.9e-72 274.2 235 66.4
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.2e-71 273.9 200 70.0
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.6e-71 272.7 235 63.4
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.4e-71 272.3 235 63.4
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.3e-70 270.4 235 65.5
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.7e-70 270.0 245 62.0
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 6.4e-70 268.1 198 71.7
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 8.3e-70 267.7 247 60.7
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 2.4e-69 266.2 215 66.5
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 5.4e-69 265.0 215 68.8
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.2e-68 263.8 260 57.7
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.0e-68 263.1 261 57.9
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 5.6e-66 255.0 252 59.5
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.1e-64 249.2 207 65.2
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 3.1e-64 249.2 204 66.2
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 5.2e-64 248.4 202 66.3
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 6.8e-64 248.1 178 71.9
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 3.4e-63 245.7 228 62.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 3.4e-63 245.7 181 70.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 2.1e-60 236.5 203 63.1
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 6.2e-57 224.9 195 61.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.4e-55 219.2 160 71.2
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.1e-52 209.9 230 50.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 4.0e-48 195.7 160 64.4
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 9.9e-47 191.0 231 51.1
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 3.8e-46 189.1 223 53.8
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 8.4e-46 188.0 237 47.7
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.3e-43 180.6 194 54.6
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.5e-42 177.2 208 49.5
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 5.6e-42 175.3 220 50.5
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.2e-38 163.3 157 54.8
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.4e-37 160.6 185 49.2
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 1.2e-36 157.5 155 54.8
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 3.3e-34 149.4 112 69.6
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.0e-32 142.5 95 74.7
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 9.0e-32 141.4 155 49.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 4.3e-26 122.5 110 56.4
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.4e-24 116.7 107 57.0
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 3.1e-24 116.3 151 48.3
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.2e-22 110.2 157 43.9
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.3e-18 96.3 116 43.1
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 4.9e-14 82.4 217 30.0
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.1e-13 78.6 61 67.2
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.1e-13 78.6 61 67.2
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 9.3e-13 78.2 61 63.9
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 2.1e-12 77.0 60 66.7
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.7e-12 76.6 61 65.6
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.4e-10 68.6 58 58.6
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 5.9e-07 58.9 36 75.0


User provided reference genes

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